G420144


Basic Information

Item Value
gene id G420144
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58455155 ~ 58455370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476131
aatttgtccatggcctgcatacccaCCAGacttgtcacccattgagcatgtttgggatgctctggatcgacgtctATGACAGtgttccagtttccgccaatatccagcaactttgcacagccattaaagaggagtgggacaacattccacaggccacaatcaacagcagatcaactctatgtgaaggagatgtgtcgcactgcatgaggcaactGA

Function

NR:

description
CTD nuclear envelope phosphatase 1A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476131 True 216 lncRNA 0.49 1 58455155 58455370

Neighbor

gene id symbol gene type direction distance location
LOC118964627 NA coding upstream 50266 58401429 ~ 58404889 (+)
LOC110524143 LOC106573897 coding upstream 85065 58312332 ~ 58370090 (+)
LOC110524142 NA coding upstream 249785 58199387 ~ 58205370 (+)
LOC110524140 LOC106613630 coding upstream 295021 58158521 ~ 58160134 (+)
LOC110524139 lsm4 coding upstream 330757 58120065 ~ 58124398 (+)
LOC118964530 NA coding downstream 25567 58480937 ~ 58482309 (+)
LOC110524147 LOC106613637 coding downstream 28673 58484043 ~ 58493673 (+)
LOC110524149 LOC106613638 coding downstream 44735 58500105 ~ 58505933 (+)
LOC110524150 LOC106613639 coding downstream 57559 58512929 ~ 58539436 (+)
LOC110524154 NA coding downstream 124172 58579542 ~ 58620188 (+)
G420139 NA non-coding upstream 9905 58444947 ~ 58445250 (+)
G420138 NA non-coding upstream 10425 58444502 ~ 58444730 (+)
G420136 NA non-coding upstream 14914 58440010 ~ 58440241 (+)
G420134 NA non-coding upstream 18970 58435963 ~ 58436185 (+)
G420133 NA non-coding upstream 20260 58434589 ~ 58434895 (+)
G420145 NA non-coding downstream 986 58456356 ~ 58456604 (+)
G420153 NA non-coding downstream 11070 58466440 ~ 58466714 (+)
G420155 NA non-coding downstream 12622 58467992 ~ 58468196 (+)
G420159 NA non-coding downstream 19476 58474846 ~ 58475252 (+)
G420465 NA non-coding downstream 21812 58477182 ~ 58477405 (+)
G420117 LOC100846954 other upstream 38379 58411240 ~ 58418268 (+)
G419452 NA other upstream 555507 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1087818 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1496990 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1529979 56923924 ~ 56925176 (+)
G420634 NA other downstream 487358 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2238887 60694220 ~ 60695905 (+)
G423922 NA other downstream 3266167 61721537 ~ 61722024 (+)
G424079 NA other downstream 3650153 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3827782 62283054 ~ 62327772 (+)

Expression


Co-expression Network