XLOC_023442


Basic Information

Item Value
gene id XLOC_023442
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22053809 ~ 22066831 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047177
CTGACCTTGCAATACTGATAAATCCTTCAGCGTCTGTTAGCTCGTGCCAGTGACCTCAATAGCTTAATAAGCTCAGAAGGAACCATAAGGGAGAGCAGGGTAAGCTGTGTTTATTAAAGCTGAACTCTGTGGAGGAGGAATGAGATGGAGTGTTGAGCAGTGGTGATCAGAGTCTGGAGTACCTGCCATCATCAGTGCTTTGACACACTCCACTCGACCCTGCATAGCAGCTTTCATCAGAGCGCTGAAACCATGGCAGTTCCTCTTCTCGATGTCAAGCCCAGGAAAATAGTTGAGTTTGGATTGAATTAAAGATGATTGAGTGTTCTTACCTGCCTGGGAAGCAGTGATGAGGGCTGTGTTGCCCTCGTTGTCTGACCAGTTCACATCCAGATGAGGACACTGGGAGAGAGCCATCACTACATCCACATAGCCTTGGTAGCACGCCACTATTAGTCCAGTCTGcaggGCAGTGTGAGCAGTGTCAGTGTGGAGGGGAGTGTCAGCAGCCTCTTCACACTGAAGCACAGCTGGAGGTTTAGGACTATAAATAAACCCTGGACAAGCTCATTTTACACGGCTATGACAATAGGAAGAGATGCTTCCAGTTGATGCACATCAGCCAGGTGTGTGTCATGATGTCTCTAGTTAAATGTACACAAACAACTGTATGTAAGCAATCCATTAGGTTAATTCCTCTGAAAAGTGTAAACACTGTGGCTTTGTGGTGCTTATCAAACATGTCTCTGTTTGAGAATCTTAACACCTAACATTGAACCAGTGGTGTGATCTTGGGACAAGATTGTTAAGGAATAAACCAGATACGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047177 True 828 lncRNA 0.46 5 22053809 22066831

Neighbor

gene id symbol gene type direction distance location
XLOC_023441 si:rp71-1f1.6 coding downstream 38058 22014810 ~ 22015751 (-)
XLOC_023440 si:rp71-1f1.5 coding downstream 50778 22002090 ~ 22003031 (-)
XLOC_023439 si:rp71-1f1.4 coding downstream 62039 21990964 ~ 21991770 (-)
XLOC_023438 apoob coding downstream 64403 21978230 ~ 21989406 (-)
XLOC_023436 acot9.1 coding downstream 80444 21959708 ~ 21973365 (-)
XLOC_023443 dap coding upstream 3459 22070290 ~ 22103585 (-)
XLOC_023444 ctnnd2a coding upstream 51973 22118804 ~ 22732001 (-)
XLOC_023445 AL590147.1 coding upstream 242113 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 coding upstream 305155 22371986 ~ 22372100 (-)
XLOC_023447 zc2hc1a coding upstream 673712 22740543 ~ 22756566 (-)
XLOC_023665 dre-mir-735 misc upstream 16111130 38177961 ~ 38178027 (-)
XLOC_023437 AL627129.1 non-coding downstream 90641 21963052 ~ 21963168 (-)
XLOC_023407 NA non-coding downstream 1521996 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 1866379 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 1868784 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1990759 20060691 ~ 20063050 (-)
XLOC_023448 NA non-coding upstream 812110 22878941 ~ 23218030 (-)
XLOC_023450 CT573302.1 non-coding upstream 1206411 23273242 ~ 23273359 (-)
XLOC_023451 NA non-coding upstream 1316281 23383112 ~ 23642905 (-)

Expression


Co-expression Network