G420511


Basic Information

Item Value
gene id G420511
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58578104 ~ 58578620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476542
CTGGTTCATACTTGAGGTAGAGTATGGACACGATGTAATAAGCAAGATCAAAAACTGGAAACATTCCCATTTTTGAGAAATTTTGGGCAACATCGCCCAAATTGAGGACTTCCAACACGTCCATGATTTAAGATTTATAACACTACCGCGTGTATTTTATGATCACTAGAATGTCAGTTGTCCGGCGACTCGCCACGAAGCTCCACGTCTTCACGAGTAAAAAGACTGTGCCACTCAAGCCCTCCTATTAATATACCTCATCTGCACAGCTTTATAATTTGTTCTCGGCCGAGCGTTTTTTCTATTCCAGCTGGTCTAATTCGTCGCTACGGTTGAAAAATGACAGATTGGCTTTTATTTTTGGGTCCCCAATTTTGATCAGATATGCAGCTATATACATTATTTAATCTAATCTTTGAACGATAGCTGGCCTAAGAAATATATTGACGATTTGCCATAGTGCTCTgcaaataacacacacagagagagagagaaag

Function

NR:

description
trimeric intracellular cation channel type A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476542 True 497 lncRNA 0.40 2 58578104 58578620

Neighbor

gene id symbol gene type direction distance location
LOC110524150 LOC106613639 coding upstream 38668 58512929 ~ 58539436 (+)
LOC110524149 LOC106613638 coding upstream 72171 58500105 ~ 58505933 (+)
LOC110524147 LOC106613637 coding upstream 86879 58484043 ~ 58493673 (+)
LOC118964530 NA coding upstream 95795 58480937 ~ 58482309 (+)
LOC118964627 NA coding upstream 173215 58401429 ~ 58404889 (+)
LOC110524154 NA coding downstream 922 58579542 ~ 58620188 (+)
LOC110524153 LOC106613641 coding downstream 41898 58620518 ~ 58646110 (+)
LOC110524155 LOC106613642 coding downstream 68540 58647160 ~ 58656842 (+)
LOC110524159 NA coding downstream 83290 58661910 ~ 58669975 (+)
LOC110524157 LOC106613644 coding downstream 95638 58674258 ~ 58699892 (+)
G420495 NA non-coding upstream 19656 58557388 ~ 58558448 (+)
G420465 NA non-coding upstream 100699 58477182 ~ 58477405 (+)
G420159 NA non-coding upstream 102852 58474846 ~ 58475252 (+)
G420155 NA non-coding upstream 109908 58467992 ~ 58468196 (+)
G420545 NA non-coding downstream 100966 58679586 ~ 58679864 (+)
G420606 NA non-coding downstream 224274 58802894 ~ 58803093 (+)
G420117 LOC100846954 other upstream 161328 58411240 ~ 58418268 (+)
G419452 NA other upstream 678456 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1210767 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1619939 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1652928 56923924 ~ 56925176 (+)
G420634 NA other downstream 364108 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2115637 60694220 ~ 60695905 (+)
G423922 NA other downstream 3142917 61721537 ~ 61722024 (+)
G424079 NA other downstream 3526903 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3704532 62283054 ~ 62327772 (+)

Expression


Co-expression Network