G420545


Basic Information

Item Value
gene id G420545
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58679586 ~ 58679864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476603
tatctttatgtttgaagcctgaaatgtggcaaatggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatagtgaaaacaataggggtcctaaaatggaaccttgaggaacgctGAAAtctacaattgatttgtcagaggacaaaccatccacagaaacaaacatatctttccgacagataagattgaaaccaggcaagaacttgtccgtgtagaccaattagggtttctaatctctccaaaagaatgtggtgatcgatggtgtcaaac

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476603 True 279 lncRNA 0.41 1 58679586 58679864

Neighbor

gene id symbol gene type direction distance location
LOC110524159 NA coding upstream 9612 58661910 ~ 58669975 (+)
LOC110524155 LOC106613642 coding upstream 22744 58647160 ~ 58656842 (+)
LOC110524153 LOC106613641 coding upstream 33476 58620518 ~ 58646110 (+)
LOC110524154 NA coding upstream 59553 58579542 ~ 58620188 (+)
LOC110524150 LOC106613639 coding upstream 140150 58512929 ~ 58539436 (+)
LOC110524161 LOC106613992 coding downstream 20131 58699995 ~ 58710980 (+)
LOC110524162 LOC106613646 coding downstream 46667 58726531 ~ 58735992 (+)
LOC110522978 r3hdm4 coding downstream 67728 58747592 ~ 58776342 (+)
LOC110524163 LOC106613647 coding downstream 76380 58756244 ~ 58802663 (+)
LOC110524164 LOC106613648 coding downstream 128706 58808570 ~ 58828505 (+)
G420511 NA non-coding upstream 100966 58578104 ~ 58578620 (+)
G420495 NA non-coding upstream 121138 58557388 ~ 58558448 (+)
G420606 NA non-coding downstream 123030 58802894 ~ 58803093 (+)
G420608 NA non-coding downstream 124118 58803982 ~ 58804208 (+)
G420610 NA non-coding downstream 125215 58805079 ~ 58805298 (+)
G420621 NA non-coding downstream 151524 58831388 ~ 58831587 (+)
G420622 NA non-coding downstream 152527 58832391 ~ 58832640 (+)
G420117 LOC100846954 other upstream 262810 58411240 ~ 58418268 (+)
G419452 NA other upstream 779938 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1312249 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1721421 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1754410 56923924 ~ 56925176 (+)
G420634 NA other downstream 262864 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2014393 60694220 ~ 60695905 (+)
G423922 NA other downstream 3041673 61721537 ~ 61722024 (+)
G424079 NA other downstream 3425659 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3603288 62283054 ~ 62327772 (+)

Expression


Co-expression Network