G420879


Basic Information

Item Value
gene id G420879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58751176 ~ 58753528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476968
TACTACCCTCTGTCCATTTCATATTACAAATGCTAAATTATATTTTAAGTTGTTCCTGAAATACTGCTTGAATCAATGATTAAATAATCACCTCATTTAAGAGTCATTGAACACTTGAATTAACATTTATTGCAATTGTCTATTCAGACATGGCTATCAGCACTCTTTTCCAGTAAGGATTACACAGCCAATTGCTTAGAAATAGGAGAAAAGTTTACATTTACAAGCTACACCACTATATTACGAATGTTGATTATTTTCCTAAACATGTACTGTCTTTACTTAagatatatacactactgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacattttttgtccattaaaataacactaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaacggcagatttttaatggaatatctacataggcgtacagaggcacattatcagcaaccatcactcatgtgttccaatggcacgttgtgttagctaatccaagttgatcgttttaaaaggctaattgatcattagaaaacccttttgcaattatggtagcacagctgaaactgttgttctgattaaagaagcaataaaactggccttctttagactagttgagtatctggagcatcagcatttgtgggttcgattacaggatcaaaatggccagaaacaaataactttcttttgaaactcgtcagtctattcttgttctgagaaatgaaggctattccttttgagaaattgccaagaaactgaagatcttgtacaacgctgtgtactactcccttcacagaacagcacaaactggctctaaccaaaatagaaagaggagtgggaggcccggtgcacaactgagcaagagggcaagtacattagtgtctagtttgagaaaaagatgcctcacaagtcctcagctagcagttgaggacttgtgaggcttctgtttctagaactagacacactaatgtacttgtcctcttgctcggttgtgtaccggggcctcccactcctctttctattctagttagagccagtttgcgctgttctgtgaagggagtagtacacagcgttgtacgagatattcCGTTTTTTGGacatttctcgcatggaatagccttcatttctcacaaAAAGAATagactaccgagttccaaaagaaagttatttgtttctggccatttgagcctgtaatcaaacccacaaatgctgatgctccagatactcaactagtctaaagaaggacagttttattgcttctttaaatcagaacaacagttttcagctgtgctaacaattgcaaaagggttttctaatgatcaatgagccttttaaaatgatacatttggattaacacaacatgccattggaacacaggagtgatggttgctgataatgggcctctgtacacctatgtagatattccattaaatcagccatttccagctgcaatagtcatttacaacattaaatgtctgcactgcatttctgatcaatttcatgttattttaatgggcaaaatTTGCTTTGCtttcaaaaataaggacatttctaagtgaccccaatcttTAAACAGTAGTGtaatacagtaccaatcaaaagtttggacacctgctcattactgggtttttctttatttttac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476968 True 1686 lncRNA 0.37 3 58751176 58753528

Neighbor

gene id symbol gene type direction distance location
LOC110524158 LOC106613645 coding downstream 75248 58671471 ~ 58675928 (-)
LOC110524152 LOC100194657 coding downstream 172565 58573258 ~ 58578611 (-)
LOC110524151 LOC106573894 coding downstream 183493 58546384 ~ 58567683 (-)
mast3b LOC106613636 coding downstream 275943 58416872 ~ 58475233 (-)
LOC110524144 LOC106613635 coding downstream 341856 58379780 ~ 58409320 (-)
LOC110524167 LOC106613995 coding upstream 80734 58834262 ~ 58836111 (-)
gamt gamt coding upstream 98491 58852019 ~ 58856447 (-)
LOC118964628 NA coding upstream 229160 58982688 ~ 59001580 (-)
trnaa-ugc-13 NA coding upstream 272998 59026526 ~ 59026598 (-)
atp13a3 LOC106613657 coding upstream 301592 59055120 ~ 59115105 (-)
G420860 NA non-coding downstream 41943 58708782 ~ 58709233 (-)
G420850 LOC106613644 non-coding downstream 56541 58692217 ~ 58694635 (-)
G420847 NA non-coding downstream 61965 58688936 ~ 58689211 (-)
G420846 NA non-coding downstream 62391 58688562 ~ 58688785 (-)
G420844 NA non-coding downstream 65256 58685579 ~ 58685920 (-)
G420894 LOC106613647 non-coding upstream 22453 58775981 ~ 58776677 (-)
G420921 LOC106613648 non-coding upstream 55506 58809034 ~ 58828570 (-)
G420924 LOC106613648 non-coding upstream 69047 58822575 ~ 58823502 (-)
G420948 LOC106573879 non-coding upstream 88057 58841585 ~ 58842095 (-)
G420951 NA non-coding upstream 111571 58865099 ~ 58865767 (-)
G420421 NA other downstream 337033 58413128 ~ 58414143 (-)
G420193 NA other downstream 637116 58112387 ~ 58114060 (-)
G419714 NA other downstream 1045240 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 1125002 57612040 ~ 57627128 (-)
G419603 NA other downstream 1139609 57611059 ~ 57611567 (-)
G420982 LOC106613655 other upstream 272575 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 379342 59131152 ~ 59138429 (-)
G422347 NA other upstream 1347237 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2305466 61058949 ~ 61081864 (-)
G424474 NA other upstream 2863342 61616870 ~ 61617244 (-)

Expression


Co-expression Network