G420894 (LOC106613647)


Basic Information

Item Value
gene id G420894
gene name LOC106613647
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58775981 ~ 58776677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476983
CCTCTTCCACAGAGTCCATCATATCCTTGTActgctcctctcctttctcatcctcgtcatcctcctcctgtcccttaATGCTGCGCTCTGAAGTGGGGCTGTCTGAGGCCCTCTGCAGCCCTGCCGCCACTGCTCTCATGGCTGCCAGCGCCGCCATCTGGGCGTGCTCCGTCTCGGGGGCAGGGCTTCCCATCAGCTCGTCCCCAATGCGGGCGGAGGTACATCCATGACCCTGCAGAGCGCCACCCTGCTGCAGCTGTTGCTGCTCCAGTTCCATCAGCAACTTGGCCCTCTGCTGCCTGTGAAGATTCTCCATCACGGCTTGAAGCTTCATCTCAAGGGAAAGTGATGCACCAGTCAGTGgtctccttcccctccccctgAACAGCTCCAGTCACAGGGGCCGGTGTGGGCTGCCACCTCTCTAAGTCCTGATGCTGAGGGGCTGGATAGAAGGCCTGACCAACTAACTCAGCGGCTGCAGAGCTCTTTTGACGGGTAGGTTCTTGAAGAGTGGGAAGGGTGCGAGACATACACTCGGACACTGTCCACAGCTCCCGGGAAGGTCAGTGAAGTCTCACCACTTAGCAGAGTCCATGTGAGTGCTGTACTTAAGAACTAGTGGCTGAAGATCTCTCTATGTGGACTTCACCGGAAGGGATT

Function

NR:

description
AT-rich interactive domain-containing protein 3A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476983 True 663 lncRNA 0.58 2 58775981 58776677

Neighbor

gene id symbol gene type direction distance location
LOC110524158 LOC106613645 coding downstream 100053 58671471 ~ 58675928 (-)
LOC110524152 LOC100194657 coding downstream 197370 58573258 ~ 58578611 (-)
LOC110524151 LOC106573894 coding downstream 208298 58546384 ~ 58567683 (-)
mast3b LOC106613636 coding downstream 300748 58416872 ~ 58475233 (-)
LOC110524144 LOC106613635 coding downstream 366661 58379780 ~ 58409320 (-)
LOC110524167 LOC106613995 coding upstream 57585 58834262 ~ 58836111 (-)
gamt gamt coding upstream 75342 58852019 ~ 58856447 (-)
LOC118964628 NA coding upstream 206011 58982688 ~ 59001580 (-)
trnaa-ugc-13 NA coding upstream 249849 59026526 ~ 59026598 (-)
atp13a3 LOC106613657 coding upstream 278443 59055120 ~ 59115105 (-)
G420879 NA non-coding downstream 22453 58751176 ~ 58753528 (-)
G420860 NA non-coding downstream 66748 58708782 ~ 58709233 (-)
G420850 LOC106613644 non-coding downstream 81346 58692217 ~ 58694635 (-)
G420847 NA non-coding downstream 86770 58688936 ~ 58689211 (-)
G420846 NA non-coding downstream 87196 58688562 ~ 58688785 (-)
G420921 LOC106613648 non-coding upstream 32357 58809034 ~ 58828570 (-)
G420924 LOC106613648 non-coding upstream 45898 58822575 ~ 58823502 (-)
G420948 LOC106573879 non-coding upstream 64908 58841585 ~ 58842095 (-)
G420951 NA non-coding upstream 88422 58865099 ~ 58865767 (-)
G420939 NA non-coding upstream 90729 58867406 ~ 58868675 (-)
G420421 NA other downstream 361838 58413128 ~ 58414143 (-)
G420193 NA other downstream 661921 58112387 ~ 58114060 (-)
G419714 NA other downstream 1070045 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 1149807 57612040 ~ 57627128 (-)
G419603 NA other downstream 1164414 57611059 ~ 57611567 (-)
G420982 LOC106613655 other upstream 249426 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 356193 59131152 ~ 59138429 (-)
G422347 NA other upstream 1324088 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2282317 61058949 ~ 61081864 (-)
G424474 NA other upstream 2840193 61616870 ~ 61617244 (-)

Expression


Co-expression Network