Item | Value |
---|---|
gene id | G420921 |
gene name | LOC106613648 |
gene type | non-coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048569.1 |
NCBI id | CM023223.2 |
chromosome length | 100798064 |
location | 58809034 ~ 58828570 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
CTD small phosphatase-like protein 2-A isoform X2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU477013 | True | 1313 | lncRNA | 0.41 | 5 | 58809034 | 58828570 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110524158 | LOC106613645 | coding | downstream | 133106 | 58671471 ~ 58675928 (-) |
LOC110524152 | LOC100194657 | coding | downstream | 230423 | 58573258 ~ 58578611 (-) |
LOC110524151 | LOC106573894 | coding | downstream | 241351 | 58546384 ~ 58567683 (-) |
mast3b | LOC106613636 | coding | downstream | 333801 | 58416872 ~ 58475233 (-) |
LOC110524144 | LOC106613635 | coding | downstream | 399714 | 58379780 ~ 58409320 (-) |
LOC110524167 | LOC106613995 | coding | upstream | 5692 | 58834262 ~ 58836111 (-) |
gamt | gamt | coding | upstream | 23449 | 58852019 ~ 58856447 (-) |
LOC118964628 | NA | coding | upstream | 154118 | 58982688 ~ 59001580 (-) |
trnaa-ugc-13 | NA | coding | upstream | 197956 | 59026526 ~ 59026598 (-) |
atp13a3 | LOC106613657 | coding | upstream | 226550 | 59055120 ~ 59115105 (-) |
G420894 | LOC106613647 | non-coding | downstream | 32357 | 58775981 ~ 58776677 (-) |
G420879 | NA | non-coding | downstream | 55506 | 58751176 ~ 58753528 (-) |
G420860 | NA | non-coding | downstream | 99801 | 58708782 ~ 58709233 (-) |
G420850 | LOC106613644 | non-coding | downstream | 114399 | 58692217 ~ 58694635 (-) |
G420847 | NA | non-coding | downstream | 119823 | 58688936 ~ 58689211 (-) |
G420948 | LOC106573879 | non-coding | upstream | 13015 | 58841585 ~ 58842095 (-) |
G420951 | NA | non-coding | upstream | 36529 | 58865099 ~ 58865767 (-) |
G420939 | NA | non-coding | upstream | 38836 | 58867406 ~ 58868675 (-) |
G420932 | NA | non-coding | upstream | 40248 | 58868818 ~ 58870227 (-) |
G420940 | NA | non-coding | upstream | 41805 | 58870375 ~ 58871526 (-) |
G420421 | NA | other | downstream | 394891 | 58413128 ~ 58414143 (-) |
G420193 | NA | other | downstream | 694974 | 58112387 ~ 58114060 (-) |
G419714 | NA | other | downstream | 1103098 | 57699745 ~ 57705936 (-) |
LOC110524128 | LOC107602773 | other | downstream | 1182860 | 57612040 ~ 57627128 (-) |
G419603 | NA | other | downstream | 1197467 | 57611059 ~ 57611567 (-) |
G420982 | LOC106613655 | other | upstream | 197533 | 59026103 ~ 59036299 (-) |
lsg1 | lsg1 | other | upstream | 304300 | 59131152 ~ 59138429 (-) |
G422347 | NA | other | upstream | 1272195 | 60100765 ~ 60101056 (-) |
LOC110524239 | LOC106573579 | other | upstream | 2230424 | 61058949 ~ 61081864 (-) |
G424474 | NA | other | upstream | 2788300 | 61616870 ~ 61617244 (-) |