G420921 (LOC106613648)


Basic Information

Item Value
gene id G420921
gene name LOC106613648
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58809034 ~ 58828570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU477013
CCCATGCAGAATTTGTATGTAAGAGGAAATGTGCATTTGCATGTGAATTGATGACAATTGCAATCATTAGGAGACTAGTGATTTTCTTTATTGACAAAGATACTTAAGTGGTCTATTGATCAATAGTACATAAATCTAATACTCCCGTTTCAAATTACAAGAGGAGCAATATAAAAGACAGCCTCATTTGTTTGATTGACCACTACTCAATGTTTAGTTTATAAATAGTTCAGAGCAGTCCAAATATCCATACAACAGAATGTACAGCGAATGTGCCGCCCACACGTATTGTTATATTAAATTATGCTAAGAAAAAATGCTACATACTTTCGAGGGATGCAGAATTACTGTTGTTTAAATGTATTCCTTCCATCCAACTTCGTTTTCCCCCCTTCCCCCAACTTTTGTCTTATAGCACAATGAACTTCTCAATCAAATTTCAAGAAAAAAAATAGTAAGGTTCAGCCAACCGCCCACCATAGGCTTTCATAGGATCGCGATGCCACACATACACTTTTCTCCGTACCATGTCACACAGACCATATGGAGCAAATACATCAAAAGCGTAGCCTATACACCAGGGGGTTTGGGGGCTCTGTTGTGTCCAGATCGAAAACAAATCTGACTTCTATCTTAATAGAAAGTCACCAGCAGGTGatcaatcaaataaaaacattatgTCATGCACACCGGTCCACCCAGAGATTTAAAAACAAATCAGTTACTTcaactttatttttttatttgcaaGCATGTAGGTTTCCAAGACATTCTGAAATGAACCTACCCTGACCTTTGTGTCGACAGAAAAGTGACCATGTGCCAACCCCTGAGCGACCGATTTGTGAAGTATGTTGAAACTTAAGGTAAGAGAATAGGGAAACCAACAATAGCCGTCTTTGGGTTCTAACCGCATGTGGGGGGAAACGGAGGGTTTAGCTCCGACAACACCCGGTGATGGCGCACATTAACGGGGGTCTTGAAGTCCAGATCTTCTCTTTCTTCATAGTCTGGGGCTGCCACCCTTTTCCTCCCACGCCCTTGTACAAGAGGGCGCTTTGTAGAGGTGGGGATATCATCAGAGTAGAGTGACTGGTCGTATAGCTGTTGTACCTCTTCATCCTTTTGAGTTACGTTCCGCGCCTCTCTCTTTGAGTTCCACCGACCAGCAATACTTCGAGACCGAAGTTTCATCTTCATGAACTGAAATGTGTTGTGTAGCTACACAAACATTACTCGTTATACAGCTCGTGAAAATAATCATGTGCCTACTCAAAATGTCGATAGGAAAAACCAGTTCCTGTTTGTGATTG

Function

NR:

description
CTD small phosphatase-like protein 2-A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU477013 True 1313 lncRNA 0.41 5 58809034 58828570

Neighbor

gene id symbol gene type direction distance location
LOC110524158 LOC106613645 coding downstream 133106 58671471 ~ 58675928 (-)
LOC110524152 LOC100194657 coding downstream 230423 58573258 ~ 58578611 (-)
LOC110524151 LOC106573894 coding downstream 241351 58546384 ~ 58567683 (-)
mast3b LOC106613636 coding downstream 333801 58416872 ~ 58475233 (-)
LOC110524144 LOC106613635 coding downstream 399714 58379780 ~ 58409320 (-)
LOC110524167 LOC106613995 coding upstream 5692 58834262 ~ 58836111 (-)
gamt gamt coding upstream 23449 58852019 ~ 58856447 (-)
LOC118964628 NA coding upstream 154118 58982688 ~ 59001580 (-)
trnaa-ugc-13 NA coding upstream 197956 59026526 ~ 59026598 (-)
atp13a3 LOC106613657 coding upstream 226550 59055120 ~ 59115105 (-)
G420894 LOC106613647 non-coding downstream 32357 58775981 ~ 58776677 (-)
G420879 NA non-coding downstream 55506 58751176 ~ 58753528 (-)
G420860 NA non-coding downstream 99801 58708782 ~ 58709233 (-)
G420850 LOC106613644 non-coding downstream 114399 58692217 ~ 58694635 (-)
G420847 NA non-coding downstream 119823 58688936 ~ 58689211 (-)
G420948 LOC106573879 non-coding upstream 13015 58841585 ~ 58842095 (-)
G420951 NA non-coding upstream 36529 58865099 ~ 58865767 (-)
G420939 NA non-coding upstream 38836 58867406 ~ 58868675 (-)
G420932 NA non-coding upstream 40248 58868818 ~ 58870227 (-)
G420940 NA non-coding upstream 41805 58870375 ~ 58871526 (-)
G420421 NA other downstream 394891 58413128 ~ 58414143 (-)
G420193 NA other downstream 694974 58112387 ~ 58114060 (-)
G419714 NA other downstream 1103098 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 1182860 57612040 ~ 57627128 (-)
G419603 NA other downstream 1197467 57611059 ~ 57611567 (-)
G420982 LOC106613655 other upstream 197533 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 304300 59131152 ~ 59138429 (-)
G422347 NA other upstream 1272195 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2230424 61058949 ~ 61081864 (-)
G424474 NA other upstream 2788300 61616870 ~ 61617244 (-)

Expression


Co-expression Network