G420939


Basic Information

Item Value
gene id G420939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58867406 ~ 58868675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU477031
TCTGGATATTATGCTTGATTATGTTAATGTCATTGCTGTGCAACATCGTGTAAATTCAGATGACAAACTATTCTGCTTGTCTCCCCAAAGAGATCAAGGGGTATTGAAATAGAAGAGAGGTAATAAATGACAGGAGTCATTGACTGCTGCATCATTGCTATGTGGGACAAGTGCAGAAGAAACAGCTCTGAGCAAACTACCCAACCTAATGTAACCTACATCTAGGCTAAACAGTTCTGAGCTAACTGACCAGACTAATCAACATCCACCCATGCTTGTCTTGTCATTCTAGGGGTGTGTTTACAGCCCAATTCTCATTCAAATGTtttactaattggtcttttgaccaatcaggtcTGAAAATcagctgatgtgaaaagatccgatgtgattggtcaaaatactaATTAGTGGAAAGAATATCAAAACCGGGCTGCCAGTGTAAACACAGCCTAACTATCAACTCATTTACCAGATGAAACTCCTTAATCTGTTCTTCTTAAAAACTATTTCAAATGTCAACCGACTGAAAAACAAGTGAACTGCATCTGCATAATTTAGGGCCATAGGAATTCCTTTCCCCAGCTTCTTCAGGTTTTCCCTCTCAAAATCGCACTAATAGAAAAAACTAAACTGGATGTTGTAAGTCcccaacaatgcttaaaccacatcaggagaccacttttgagttCTGGGAAAAATTTGAGAAATGTCTTACCCTTTAATTCCAGTGGGCACCTAGTAAGAGTCCGTTTAGTGATGTTTTTGTAGTACACATGATGgtagagtttgcaaaacaaatatccactggattgatgcaaataataaTGACATGAATATCAAGATACTGTACTCAAGTATAGTCATCATGATGAAGCCAATTTATTTCAAACTACATGTAATACTAGTGTGTCCCTTAATAAAACATCTAAATGCATCAAAAGCTGATCCGGTCACACAAAGTCAAGATGTTTGAAATGCCTGCAAACTTTCTAAACTTCCTCCCCATGTAAATAGGACTGCACGGGGAAAGCTTTCCGTATTTAAGGGTGGCATCCATTACAACGcctgtgaatgaatgaatgacgaACAAGATGTTCCACCAGAAGACACAGGTGGGTCTAGCTATAATTGAGCATGGTGGATTGAATGCAGCTTACTCTCTTTGGGTCAGAATAGTTTGTCATGAGATTTAGAGATGGGAGGTACGGAAGGAAAAAAAAGGGATCAGCTTTTACCTCGGGGCCTCTGTTTTTCCGCGTCATAGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU477031 True 1270 lncRNA 0.39 1 58867406 58868675

Neighbor

gene id symbol gene type direction distance location
gamt gamt coding downstream 10959 58852019 ~ 58856447 (-)
LOC110524167 LOC106613995 coding downstream 31295 58834262 ~ 58836111 (-)
LOC110524158 LOC106613645 coding downstream 191478 58671471 ~ 58675928 (-)
LOC110524152 LOC100194657 coding downstream 288795 58573258 ~ 58578611 (-)
LOC110524151 LOC106573894 coding downstream 299723 58546384 ~ 58567683 (-)
LOC118964628 NA coding upstream 114013 58982688 ~ 59001580 (-)
trnaa-ugc-13 NA coding upstream 157851 59026526 ~ 59026598 (-)
atp13a3 LOC106613657 coding upstream 186445 59055120 ~ 59115105 (-)
tmem44 tmem44 coding upstream 256406 59125081 ~ 59131011 (-)
lsg1 lsg1 coding upstream 262477 59131152 ~ 59138429 (-)
G420951 NA non-coding downstream 1639 58865099 ~ 58865767 (-)
G420948 LOC106573879 non-coding downstream 25311 58841585 ~ 58842095 (-)
G420921 LOC106613648 non-coding downstream 38836 58809034 ~ 58828570 (-)
G420924 LOC106613648 non-coding downstream 43904 58822575 ~ 58823502 (-)
G420894 LOC106613647 non-coding downstream 90729 58775981 ~ 58776677 (-)
G420932 NA non-coding upstream 143 58868818 ~ 58870227 (-)
G420940 NA non-coding upstream 1700 58870375 ~ 58871526 (-)
G420937 NA non-coding upstream 2972 58871647 ~ 58873135 (-)
G420938 NA non-coding upstream 5827 58874502 ~ 58875491 (-)
G420933 NA non-coding upstream 8610 58877285 ~ 58878292 (-)
G420421 NA other downstream 453263 58413128 ~ 58414143 (-)
G420193 NA other downstream 753346 58112387 ~ 58114060 (-)
G419714 NA other downstream 1161470 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 1241232 57612040 ~ 57627128 (-)
G419603 NA other downstream 1255839 57611059 ~ 57611567 (-)
G420982 LOC106613655 other upstream 157428 59026103 ~ 59036299 (-)
G422347 NA other upstream 1232090 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2190319 61058949 ~ 61081864 (-)
G424474 NA other upstream 2748195 61616870 ~ 61617244 (-)

Expression


Co-expression Network