G420932


Basic Information

Item Value
gene id G420932
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58868818 ~ 58870227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU477024
TATCCAGTGCAGTCAGTTGAACTACTGAGGAATATAAAAACTATATAGATTTCATGACACTTAAGTGGTTTCAGAGCATTCATGTATGCATTGGGTGCCAATTGGCCCAGCGGTATTGATGTTAGTTCATTTCATCCAAACCCCAACTTGATCTGCCCCTTGGTATATTGCTGTGTAGCACAATCTGGCAGCATCCATTGTTAAtgcataacaaaacaaaaaatggaGAAACAGAAACTGTACCATGTCTAAAGCTTTTTCAAGTTTTCCCAAATGTGGTTTTATGTTTTAGAGTCAGCCAGGATAAGCCTAAATGGAAAATTACAATATTGCTTACAACAGCAACACAAAGATATAGGCCATTTTGTCTTACGAAATGTGTAAGTAACAACTAATGATGCCGTCAAGAGTTTGCATGGGGGATAAACAAAGTTCCCGTCAAACATGGTGAAAAACCCAATGGTGTAAGTATTCAACTCTTActgtacaaaataaaaaccctgaaATGAAGGCTTTGATAAGGTGCATAGAGCCTGGGTTATTCTAACAAATCAAATCTAAACTTTAATTGGTGGCGTACAcagttttgcagatgttattgcagatgCATCGAAATGCTTGTTTCTAGCACCAGCAATATCAAGCAAAAACACCATTCATGCCAATGACTACAGTCCCTGCATGATATTAAAAGTTACTCTAGCTGAACCTATGAATATACAGCACTGTAATTGAATCCTTCATTTAATTGTACATTTAGAAGCCCAACATTGGCAAATGTCCTGGTTCTGATAAAGTCTTGTGATTTTTTTGTGGCGATAAAAACTTTCCACAGTACTTGAGTTATGCAGCAGCAGCAATAGCAATAGCCCACTACAGTGAACCAGTTTCATTTTGATAAACTCATACCAGTGGCAGAATTGGGTTGTGAGAAAATCTCCACTCTGGGACCTAACCTGATTCCAATTAAATGTCCTTTGAGACAACCGAGAATTTGAAACCGCAATATTATTTCAAGCTGTCCCAAGCCGCCTGATCTACAACTATAAATATCATCCATCGATGACCTGTCCTTAATCTAGATTCAAAACTTAGTTTAAGCATTTGCAAGCAAACATTCCTAGACAATCTACCCAAAACAAAGGTGTCAAAAACCCAATGTCGTGCTAAGAGcaacaaaacaaagaaaactCAAGTTCATAACCATGATGAATCTAAACTTTGTATACACCCCAAATTGACAGCCTGCACATTCCATTTTTGGTTCAAACATCTGGCCTGTACCTCTGTGATACCACTCAGTACACAATAACCTAAAGGAGAAAAGACAAATCTTAAGAGACACCGTTAATCACATTCAAACCATTCACAAGGAGAAGGACAGAAAAATTAAAATAGGAAGGGCTTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU477024 True 1410 lncRNA 0.38 1 58868818 58870227

Neighbor

gene id symbol gene type direction distance location
gamt gamt coding downstream 12371 58852019 ~ 58856447 (-)
LOC110524167 LOC106613995 coding downstream 32707 58834262 ~ 58836111 (-)
LOC110524158 LOC106613645 coding downstream 192890 58671471 ~ 58675928 (-)
LOC110524152 LOC100194657 coding downstream 290207 58573258 ~ 58578611 (-)
LOC110524151 LOC106573894 coding downstream 301135 58546384 ~ 58567683 (-)
LOC118964628 NA coding upstream 112461 58982688 ~ 59001580 (-)
trnaa-ugc-13 NA coding upstream 156299 59026526 ~ 59026598 (-)
atp13a3 LOC106613657 coding upstream 184893 59055120 ~ 59115105 (-)
tmem44 tmem44 coding upstream 254854 59125081 ~ 59131011 (-)
lsg1 lsg1 coding upstream 260925 59131152 ~ 59138429 (-)
G420939 NA non-coding downstream 143 58867406 ~ 58868675 (-)
G420951 NA non-coding downstream 3051 58865099 ~ 58865767 (-)
G420948 LOC106573879 non-coding downstream 26723 58841585 ~ 58842095 (-)
G420921 LOC106613648 non-coding downstream 40248 58809034 ~ 58828570 (-)
G420924 LOC106613648 non-coding downstream 45316 58822575 ~ 58823502 (-)
G420940 NA non-coding upstream 148 58870375 ~ 58871526 (-)
G420937 NA non-coding upstream 1420 58871647 ~ 58873135 (-)
G420938 NA non-coding upstream 4275 58874502 ~ 58875491 (-)
G420933 NA non-coding upstream 7058 58877285 ~ 58878292 (-)
G420953 NA non-coding upstream 9970 58880197 ~ 58880430 (-)
G420421 NA other downstream 454675 58413128 ~ 58414143 (-)
G420193 NA other downstream 754758 58112387 ~ 58114060 (-)
G419714 NA other downstream 1162882 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 1242644 57612040 ~ 57627128 (-)
G419603 NA other downstream 1257251 57611059 ~ 57611567 (-)
G420982 LOC106613655 other upstream 155876 59026103 ~ 59036299 (-)
G422347 NA other upstream 1230538 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2188767 61058949 ~ 61081864 (-)
G424474 NA other upstream 2746643 61616870 ~ 61617244 (-)

Expression


Co-expression Network