G421133


Basic Information

Item Value
gene id G421133
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59170033 ~ 59171379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU477252
ACTAAATGCTAGTGAAACTGAATTACATGCACTCAGAAATGTCATTCCTCTGCTTGAGGTTTAAAACACAAAGgggacatatttgcatatgttatgGTCTTATGAAGGCTGGCAAAGAGTATGTTCCTTTTTATTTTtagcatgtctacagattctcccttctgcctgtttttgtttgcttggaaatgttgctCTGGAGACTGTTATCTGAAGAAACTGTGTAATCAAGCATTTATAGGGATTAAGAAATGCATGCCCAATGAAAGCATGCCCATTTGAGGGGGGATGCCTATTTAGGCAATCCCTAGTGGACAAAAGAACTGATCGCGGAcgacaggaaaaggcgggccgaacagtcccccattaacatcgacgtggctgtagtggagcgggtcgagagtttcaagttccttggtgtccacatcaacaacaaactgtcATGATCGTAACTCACCAAGACAGTCATttagagggcacgacaacaccttttccccctaaggagactgaaaagatttggcatgggtccccagatcctcaaaaagttcctacagctgcaccatcgagagcatcctgactgattgcatcatcgcctggtatggcaactgctcggcatctgaccgtaaggcactacagaggatagtgcttatggcccagtacatcactggggccaagcttccttccatccaggacctatatactaggcagtgtcagaggaaagctcaAAAAATTgccagagactccagtcacccaagtcatagactgttttctctgctagcACACGGCAAGTGgaaccagagcgccaagtctaggaaaaAAAGCCATAAGCTCTAAGACtgcataagactgctgaacaagtaatcaaatggccacagactattacattgacccccccccccccccccccccccaaatttgttttgtacactgctgctactcgctgtttattatttatgcatagtcacttcacccctacctccatgtacaaattacctcgactaacctgtaccccagcacattgacaggATGGGGCGACACAGCTATATCGTATGCAAGTAACAAGAGCGCTACAGTACTATTAGTCCTCTGATATGAATTATATGGAGGATTTGTggtttctgtgtgttaatgtataTTTGAGGTCTATGtggtgttgtttttttctcttcaTTTTTCAAACCTTTCCCTTGGGAATAAACTGGGAAGGAAATTGAATTAGGAAATTGTACTGGGAGACAGTTGAGTTATTGACCAGATTGTTGGGGGTTGGGTGTGCAGGCAGCTCGGGCTGGCTGGTCGGTCTGGCTGAAATTTGATGTAGAGGGTGTCTTAATAAAGGCAATCAAAAGT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU477252 True 1347 lncRNA 0.45 1 59170033 59171379

Neighbor

gene id symbol gene type direction distance location
LOC110524179 NA coding upstream 703 59167253 ~ 59169330 (+)
fam43a fam43a coding upstream 28581 59139437 ~ 59141452 (+)
LOC110524173 LOC106613656 coding upstream 119867 59038387 ~ 59050166 (+)
LOC110524172 LOC106613655 coding upstream 133730 59026005 ~ 59036303 (+)
LOC110524171 LOC106613654 coding upstream 156951 59007333 ~ 59013082 (+)
srsf11 LOC106613665 coding downstream 179400 59350779 ~ 59358665 (+)
LOC110524183 cgl coding downstream 284985 59456364 ~ 59463907 (+)
LOC110524186 LOC106613996 coding downstream 419681 59591060 ~ 59595336 (+)
LOC110524187 LOC106613668 coding downstream 472404 59643783 ~ 59661241 (+)
LOC110524190 LOC106613673 coding downstream 543327 59714706 ~ 59734498 (+)
G421090 lsg1 non-coding upstream 37028 59131185 ~ 59133005 (+)
G421080 NA non-coding upstream 47501 59122304 ~ 59122532 (+)
G421069 NA non-coding upstream 53329 59116486 ~ 59116704 (+)
G420665 NA non-coding upstream 217156 58952502 ~ 58952877 (+)
G420663 NA non-coding upstream 218699 58951093 ~ 58951334 (+)
G421188 NA non-coding downstream 62158 59233537 ~ 59237839 (+)
G421362 NA non-coding downstream 168672 59340051 ~ 59347531 (+)
G421376 NA non-coding downstream 187703 59359082 ~ 59359566 (+)
G421372 NA non-coding downstream 188537 59359916 ~ 59361000 (+)
G421517 NA non-coding downstream 493345 59664724 ~ 59665892 (+)
G420634 NA other upstream 225816 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 753257 58411240 ~ 58418268 (+)
G419452 NA other upstream 1270385 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1802696 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 2211868 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 1522878 60694220 ~ 60695905 (+)
G423922 NA other downstream 2550158 61721537 ~ 61722024 (+)
G424079 NA other downstream 2934144 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3111773 62283054 ~ 62327772 (+)
G425224 NA other downstream 3873711 63045090 ~ 63051530 (+)

Expression


Co-expression Network