G421935


Basic Information

Item Value
gene id G421935
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59350846 ~ 59352325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478132
ACAAATTACAGATACAATTATTTTGTATTAATAGGCTATACTAGACCTGCAAAATTACACATGTATTCCCGTTTACCCCTTATTATATTGTCAATCTCTGGTAAGACTTTTGTACTAAATCTTACTTGAAGTAAAATATTGATAATCAATGGGGTTTGATTGAGCTTTGTTGTATGTTGGAAAACATTAGAAATAGGACAAAGACGACCAACCTTCTGCGAATGGGACAACAATCAGGGCTCTGTCCACAAAGACAGTGTTGGTCAGATGCTGGGACACTCCAACCGACTCAGGTTCAAGGAACTTTACAAAACAGACACGTGAAGTCACAGGCAAGGAAGATTCACTGGAAGAAAATACACATTTGTTGTGCAAGAAATACAAAGATTCTCGACATATGGTAGAAGAAACATGGTACTGACACTGTTAGTATACTTTCTTCCTGAAAACATATATGCTCACTATTCTAATTAAACATATTTTATGTCTGGTTTAGTTACAATTGGGAAGAGAGAGCAATGAAAGAACGTTGCATCTCTTGTAGTCTTTTCTTGTCTTTGCCATGAGAGCTTCAGAGGGATGATCAAGACGTCTTGTAATTCCTACCTTAACTGCAGTGCAGCCAGGTGTAATTCGACAGGTGAAAAACAGCAAAGCACAGAACAGATTAATTAGCTCCTACTACCCTGCCCTGTTATTCAAAGGAGCCATTTGTTTTCACAGTATCATTGTAATTCAAAACAGTTTGATTCGCGACAGAATGTTTTGTCAACTAGTTACTATATTACTGACTGCAGGACTGATTTATTTCTCGATATCACAAGATAACTTACTAGCCAGTTGTTTCTCAGTACAGTTAGCTGGTTAACGTTAGGATGTTTCATATAGGCACTGAGGGACAAGAGTTCGCAGATATCCTACTCCGTGAGCTTGCAGTAAGCAGTGTTCACTAGCTAGCCATCAAGTTAACCATCTAGCTAAATTGCGAGCTCACAGCCATGTAGGCGCGAGTTTGGCTCCTCTGTATCAGTTGCGTGTGCTAACTAATTACTACTAGCTAGGGGTGGACTGAGGCCGCACAGGCCCCAACCTATGTGATGGCCAGATTTGGCAGAATTTTCATGGAAAATGTACGTcgctactagctagctaattgTTTAATATTCATAATACTCACTCTGGTGGAAATAACTTCAGTTCTTCAATATTTCCAAGAAACCcgaagagagttctcatctgttcGGAGGTGGTACTCGGAGAGACATTTGTCACCTGAATAACGTTCGTCATTTTCCACGACTAGATGTTAATTTGAAACGCACAGACGTCTAGCTAGATGTAACAACCCAACTAATTTAGCATCTAAAGAACGTAACATATAATTGTGCAGTCAAGCAAGCAAACAACAATCATTTCCACTAGCTAATGCTACACAATTGAATTCCCACGGCCATTAGCAC

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 11 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478132 True 1460 lncRNA 0.40 2 59350846 59352325

Neighbor

gene id symbol gene type direction distance location
lsg1 lsg1 coding downstream 212417 59131152 ~ 59138429 (-)
tmem44 tmem44 coding downstream 219835 59125081 ~ 59131011 (-)
atp13a3 LOC106613657 coding downstream 235741 59055120 ~ 59115105 (-)
trnaa-ugc-13 NA coding downstream 324248 59026526 ~ 59026598 (-)
LOC118964628 NA coding downstream 349266 58982688 ~ 59001580 (-)
LOC110524182 LOC106613664 coding upstream 7561 59359886 ~ 59448197 (-)
LOC110524184 LOC106613666 coding upstream 116455 59468780 ~ 59563676 (-)
LOC118964629 NA coding upstream 256057 59608382 ~ 59612038 (-)
LOC110524188 LOC106613669 coding upstream 313590 59665915 ~ 59709692 (-)
cope LOC106613672 coding upstream 358290 59710615 ~ 59714101 (-)
G421144 NA non-coding downstream 176912 59173614 ~ 59173934 (-)
G421141 NA non-coding downstream 178508 59172126 ~ 59172338 (-)
G421138 NA non-coding downstream 181554 59166913 ~ 59169292 (-)
G421137 NA non-coding downstream 184064 59166373 ~ 59166782 (-)
G421079 NA non-coding downstream 228811 59121749 ~ 59122035 (-)
G421940 NA non-coding upstream 6784 59359109 ~ 59359689 (-)
G421948 NA non-coding upstream 18324 59370649 ~ 59371499 (-)
G421950 NA non-coding upstream 19994 59372319 ~ 59372754 (-)
G421951 NA non-coding upstream 20660 59372985 ~ 59373605 (-)
G422088 NA non-coding upstream 310996 59663321 ~ 59664610 (-)
G420982 LOC106613655 other downstream 314547 59026103 ~ 59036299 (-)
G420421 NA other downstream 936703 58413128 ~ 58414143 (-)
G420193 NA other downstream 1236786 58112387 ~ 58114060 (-)
G419714 NA other downstream 1644910 57699745 ~ 57705936 (-)
G422347 NA other upstream 748440 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1706669 61058949 ~ 61081864 (-)
G424474 NA other upstream 2264545 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 2297642 61649967 ~ 61651775 (-)
G424502 NA other upstream 2306708 61659033 ~ 61659585 (-)

Expression


Co-expression Network