G422088


Basic Information

Item Value
gene id G422088
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59663321 ~ 59664610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478292
ctattattctacaatgtagaaaatagtaaaaataaagaaaaacctttgaatgagtagctgtgtccaaacttttaactggtattGTAGCTGAAATCGATTGATTGGGTTGAGCATCAACCTTATGATTTCATTAAAGAAATGGATTTGACTCATCTTAATAACCAATATGTTGGCAGTTCACAGAAATTAAAGGGCCCTTGTGTAAAATAAGATAAAAATTGAATCTAAAAAAACATATATGCACATATGATATTCAGGAATGCATGACACTGGAATGGTTTTTGGAATGTGCTACGAAGTCATTTTTTAATAACacaaatgaagaaagaactaCATAATCGTATCCTTTATCAATGTGCAGAACTCATAAAAAAGTGAAGTCATTCAAGCAGACACCACCACACAGTCCAAAAGGTTTGGTATCCTCTTTGCATTTGAATGTGCTCCTggttgtgtgtgcctgtgtgctgCGACTCTCCAGGTTTTTCTTTGCTGTGACTTAGAGGGGGTGCTGTCCTTTATGATCAAATTCAAGCTCTTTCGTTATGATGAACAGCATGCTTGTGCTGGAACAGTCCACAGATGTGGGCAGGTAGAAGTGTTCATAGTTGTGGTCTTTCAGTCCCCATCTACCACTAGTGCCAGTGCCCAGGATAACCTAGCTTTTGATTTTACATTCAAACATTGTCATTATTattctactttttttttttttttaattgctgCTGTTTCTGAGAACACTGTTTTGTAATCCAGTCGTGTCCCTTTTCCTGTGTATGCATCTGTTAATTGTTAGGTACACATGATGAGGTGCCCTGATTTCTCCCGTGGTACTGTCCACGAAGACGTGTGCACTTTTCCTCCACCTCGGCCCAGCTCTCTCCCGGTCTGTCCTCTCCACCAGACAAAAAACACCAACAACCTGATTGGCTTTGTGAGGTGAAACTACTCACAacaaattcacacaaaaaaaaagttaAGAGTAGCAGTCAGTTATTTTAAGTTTCATTTCGAGGCAGATTTCGCTGTTATTTTTGACCAGCATTGAATACAAAAGTCCATCCACGGTTCAGGATGAAAATGTGAAAACATTTTGTGGAAGAAGTATTGTTCTATGCATTTCCTTTTGATAGTTTAATGCTTTAAGAATGTGCCAAAAATATTGATCTTTATCACCGAGAAGTGTTCTGATGAGAGGCCTGGTTGAGACCTGAGTGgctagaggagaaagagggaggttgTAGTGAATATGAAGGGCTTACACCACACAGGTGTTTCTTACAAATTGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU478292 True 1290 lncRNA 0.38 1 59663321 59664610

Neighbor

gene id symbol gene type direction distance location
LOC118964629 NA coding downstream 51283 59608382 ~ 59612038 (-)
LOC110524184 LOC106613666 coding downstream 99645 59468780 ~ 59563676 (-)
LOC110524182 LOC106613664 coding downstream 215124 59359886 ~ 59448197 (-)
lsg1 lsg1 coding downstream 524892 59131152 ~ 59138429 (-)
tmem44 tmem44 coding downstream 532310 59125081 ~ 59131011 (-)
LOC110524188 LOC106613669 coding upstream 1305 59665915 ~ 59709692 (-)
cope LOC106613672 coding upstream 46005 59710615 ~ 59714101 (-)
LOC110524192 LOC106613675 coding upstream 80866 59745476 ~ 59754819 (-)
LOC110524193 LOC106613676 coding upstream 108151 59772761 ~ 59776656 (-)
LOC110524194 LOC106613679 coding upstream 123134 59787744 ~ 59801204 (-)
G421951 NA non-coding downstream 289716 59372985 ~ 59373605 (-)
G421950 NA non-coding downstream 290567 59372319 ~ 59372754 (-)
G421948 NA non-coding downstream 291822 59370649 ~ 59371499 (-)
G421940 NA non-coding downstream 303632 59359109 ~ 59359689 (-)
G421935 NA non-coding downstream 310996 59350846 ~ 59352325 (-)
G422089 NA non-coding upstream 108 59664718 ~ 59665888 (-)
G422125 LOC106613673 non-coding upstream 54099 59718709 ~ 59734459 (-)
G422138 NA non-coding upstream 75672 59740282 ~ 59740548 (-)
G422139 LOC106613674 non-coding upstream 76794 59741404 ~ 59741629 (-)
G422155 NA non-coding upstream 96340 59760950 ~ 59761159 (-)
G420982 LOC106613655 other downstream 627022 59026103 ~ 59036299 (-)
G420421 NA other downstream 1249178 58413128 ~ 58414143 (-)
G420193 NA other downstream 1549261 58112387 ~ 58114060 (-)
G419714 NA other downstream 1957385 57699745 ~ 57705936 (-)
G422347 NA other upstream 436155 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1394384 61058949 ~ 61081864 (-)
G424474 NA other upstream 1952260 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1985357 61649967 ~ 61651775 (-)
G424502 NA other upstream 1994423 61659033 ~ 61659585 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G52452 NA non-coding NC_047597.1 CM018543.1 25361521 ~ 25362463 (-)