G421517


Basic Information

Item Value
gene id G421517
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59664724 ~ 59665892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU477657
ctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctcagcacttgttggctgcttttccttcagtctgcagcccaattcatcccaaaccatctcaattggggtcAAGTGATtgaggaggccaggtcatctgatgcagcactccatcactctccttgctcaaatggcccttacacagcctggaggtctgttgggtcactgtcctgttgaaaaaaaaatgataatcccactaagcacaaaccagatgggatggcgtatcgctgcagaatgaggtggttaagtgtgccttgaattctaaataaatcactgaccgggtcaccagcaaagcacccccatgccatcacacctcctcctccattcttcatggtgagaaccacacatgcagagatcatccgttcacatatTCTGCATcttacaaagacacagcggttggaaccaaaaacctcaAATTTAGACGCATCAGACCAAAGCACaggctaatgtccattgctcgtgtttcttggcccagtcaagtctcttcttattggtgtcctttagtagtggtttctttgcagcaattagaccatgaaagTCTGATTCAtgcggtctcctctgaacagttgatgttgagatgtgtctgttacttgaactcagtgaaacattcatttgagctgcaatttctgaggctggtaactctaatgaacttatcctctgcagcagaggtaactctgggtcttcctttcctgtggcggtcctcatgagagccagtttcatcatagcgcttaatggttATTAaaaactgcatttgaagaaactttcaaagttcttgaaattttccagattgactgaccatgtcagTAATGTTGGgcagttgtttctctttgcttatttgagctgttcttgccataatatggactttgtcttttaccaaatagggctatcttctgtataccaaccctaccttgtcactgaatggctcaaatgcattaaggaggaaagaaattccacaaatgtacttttaacaaggcacacctgttaattgaaatgcatttcaggtgactacctcgtgaagctggttgagagactgccaatagtgtgcaaaactgtcatcaaggcaaagggtggctactttaaagaatctcaaatatttttaacacttatttggt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU477657 True 1169 lncRNA 0.43 1 59664724 59665892

Neighbor

gene id symbol gene type direction distance location
LOC110524187 LOC106613668 coding upstream 3483 59643783 ~ 59661241 (+)
LOC110524186 LOC106613996 coding upstream 69388 59591060 ~ 59595336 (+)
LOC110524183 cgl coding upstream 200817 59456364 ~ 59463907 (+)
srsf11 LOC106613665 coding upstream 306059 59350779 ~ 59358665 (+)
LOC110524179 NA coding upstream 495394 59167253 ~ 59169330 (+)
LOC110524190 LOC106613673 coding downstream 48814 59714706 ~ 59734498 (+)
LOC110524191 LOC106613674 coding downstream 75324 59741216 ~ 59744639 (+)
LOC110524195 LOC106613677 coding downstream 136136 59802028 ~ 59821970 (+)
LOC110524196 LOC106613678 coding downstream 161183 59827075 ~ 59838227 (+)
LOC110524197 LOC106613680 coding downstream 203798 59869690 ~ 59880569 (+)
G421372 NA non-coding upstream 303724 59359916 ~ 59361000 (+)
G421376 NA non-coding upstream 305158 59359082 ~ 59359566 (+)
G421362 NA non-coding upstream 317193 59340051 ~ 59347531 (+)
G421188 NA non-coding upstream 426885 59233537 ~ 59237839 (+)
G421133 NA non-coding upstream 493345 59170033 ~ 59171379 (+)
G421614 LOC106613672 non-coding downstream 44725 59710617 ~ 59712799 (+)
G421616 NA non-coding downstream 52133 59718025 ~ 59718250 (+)
G421627 NA non-coding downstream 73927 59739819 ~ 59740031 (+)
G420634 NA other upstream 720507 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 1247948 58411240 ~ 58418268 (+)
G419452 NA other upstream 1765076 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 2297387 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 2706559 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 1028365 60694220 ~ 60695905 (+)
G423922 NA other downstream 2055645 61721537 ~ 61722024 (+)
G424079 NA other downstream 2439631 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 2617260 62283054 ~ 62327772 (+)
G425224 NA other downstream 3379198 63045090 ~ 63051530 (+)

Expression


Co-expression Network