G422125 (LOC106613673)


Basic Information

Item Value
gene id G422125
gene name LOC106613673
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59718709 ~ 59734459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478336
TGAAGCCCTCGACCAGCACCAGTTCCTCCCCGCTGAATTGGTTGTTGCGGTAGAGGACACCCAGCTTCACCACCATCTTGATGAGGTTCTTGATGATCTTCTGGGCCTCCTTGCGGTTGCGTGTGTACTCCTTGGTGACTCGGTAGAGCTCGTCCAGCACCTCGCTGCTGGTGTCATCAATGAACAGGTTGGCCACGCTCTTGGTGGCCATCTTGCTCATCAGCTTCTTCTGGGCCTGAAGGGCCAGGCTCTTAGTACTGAAGGAGTCCATGATGACgtCTTTCCTTCAAATCAAACCGGATGCGGGGCGTGAGTCAAAACACCGCGGAGCACACTGCTACAATTTGACAATTTAATCTAGGATTAATCTCGAGTCTTCATCATGGCAATCCATAGCAAGTCAATGTACAGCTCCATGAATCGGACCTTCGTCTTTCCTCGAGAAAAAGGATCTTCTCAGTCGATTTAATGTAAATGTATGTTGTATTAGGTGCTATTGTGTAAATAATTTAGTGTTTTCTTCTCTCCCTGTTGTAACCCGAC
>TU478339
AGGAGTAATCATGTATATTCGTCATGTCTAGTATCGAGAAGGCACACTAAAACAAACACGTGTACAACAACATATAACAAATAATACAGAAAACATTTCACTTTCCATTGGTAGAAATACAACATTACTTCAAATAATGTATATTTTGTGGGCTAATGTAAAATGTATGAAGCAGAAATTGGTCCGTATTTAATTCTCCAACATTGGGTCCAACGCTAGTAAGTGTGTCATGAGCACAAGCTCTGAGACTTAAACCTGAGAACTGTTGTGATTGGAAAGAATGGCATCTTTGACATTTAAAAACTAAGCCATCTCAACTATTCTGGGACTTCAATTTTCTAGTCCTGCGAGCGTTCACTTAATACAACTCCCCCAGATGTAGGAGGATGAAGTCAAATGGAGACCACATCTTCAAATAAAATGGGAGGGAataacacattttttatttttttttgaaaACAATCTTCATCAAGTGCATACCGATTACCCTAATGTTCCTTTGGAAAGGTCCTTATCGCGATTGCCGAGATTGCttatctctccctttcctctctttgGCAGAATTGCTACAGTACAGACCAGAGAGGTTTCTGtgacagagaagagagcgagagagacagcagatCCTGGAGAACACAGCGCTCATTACAACTCTCTGCTGCAGCTCCTCACAGGTATACACTGTCACTGAGAATACTAAATGAGGCCACAGCGCAGTCTCCTAGACAGGCTCAGCcatacaaaaaaacacacagattGGCCTAGAAAAGAAAATAAACATCCATTATGTGCAGGGTAGTACTATATAACAAACTAAACAACAATCTAAATGGTTCATTAAAAAACAACTTCACTCCCAAATAGGACGTGCACCAAGCAAAGATttgatctcaatcccattaaaTGGAGGCTGGGGTGTTGGAATGGATTAGCTGTAGGTAGGCTATTATTGGCCTGGAGTGGGGGAATAATTAATAGAATAATGGAAGGTACAATCCGGTATTGTTTTAGTCTCTGCTCTAATCCATAATACTATGTTACGTGACGAAACAGCCTGGGCCTCACCAACAAAGGCAACCTACTTCCCTTTCCCATATCCTCCAGTCATTAACATGACTGTATATGGAGTCAGTCTCGGCTGCGCAGAAATCAAAGTGTTTGCTGGGTAGGGGTTTCGGTTCAGCTCAGATGAAGTTAAAGAGCTGACGAGTCAGCAGCTCGGTGACAATTAGGTTGCACAGCACAATCAACTTCCTCCATGTTTATAGCCCCCATGACCCAAATTATACACTCTTTGGTGTGATTGTAATAAAAACAGGTAATTAGGGCCAAAGCAGGCAAAAGGTATTTTGATCCAAACAAAGTGTAGACTTACTTAGGATATGGAGTGTAAATGCTGAAACTGGGTTATTGGTCTGTTACGTGAATTATTGCAAAACAATTAGTGCCGTTTTAACCTCAAGTGGCACTCCTGTCTAACAACAGAGTCCCTTATGGTTTGTCCTGAAGTAGGTTAACATCTACCATTGTTCTCTTCACTCTAAAAGCATTTCAGCCCATTCAATTGACTACTCGTACATATGATCTTATAGGCTGTGGTTGGAAGACCTTCCAGGGGGCAGACAACCATTGGAGAGAAAAAGACAGTTCCAAGGCATTGGTGAAGTCCTATGACTGGAAATGATTGACAAAAGCTTGTAATATACATTCACTGAAGAGGTCCATGTTGTTCCTTTAAATAAAGAGGCGTAGAAGAAACTTTGGACTAACTAGCCTTGGAACATCCTTCAGTGTTGTACAGTAATGTCGGAGGGGCAAAATGTCAAATGTCCACTATGCATAATGTTTgtctataaaataaaataaaaaagccaAGGCGGCAACCATGTGGTGAATGTCACACCACCAGGTAAGGCCTCAAAGGTCAAAGGGAAGGGGTCAAAAGGtcctgtgtggggggggggttaaaggtTGCCCTCGTCCAGCATCTTATTGACACCATCGCAAATCCTCTGCAGGTGGTTGCGGTACACCTCAGAGGGGCCGTAGAGAGCTGCCAGGAAGTCACAGTCTGCGAATTGGTTGAACACGTGGTTGACCCGCAAGTGGCTCTTGGCTGTTAGGTGGCGGTTGATGGCCTGGTGCAGCAGCTCACGGCACTCATTCAGGATGGCGCTCATCACACGCCGGTCGAATGTGAACTCGATCTGGTGGAAGCTGACAGCTGTCATGGCCAGTGTGTGGACCTTCTTCCTGGAAAGGAGACGGTGGCCATTGTTGTTATGCATGATGGCTTAGGTACAGTAGATGGCAAAGGACATCCCATTTCTCAGAGGGccacagttttttttttctcagccTAACACAATTGTTTTCATTAGGGCTGGAATAAAAACCTGTG
>TU478332
AGGAGTAATCATGTATATTCGTCATGTCTAGTATCGAGAAGGCACACTAAAACAAACACGTGTACAACAACATATAACAAATAATACAGAAAACATTTCACTTTCCATTGGTAGAAATACAACATTACTTCAAATAATGTATATTTTGTGGGCTAATGTAAAATGTATGAAGCAGAAATTGGTCCGTATTTAATTCTCCAACATTGGGTCCAACGCTAGTAAGTGTGTCATGAGCACAAGCTCTGAGACTTAAACCTGAGAACTGTTGTGATTGGAAAGAATGGCATCTTTGACATTTAAAAACTAAGCCATCTCAACTATTCTGGGACTTCAATTTTCTAGTCCTGCGAGCGTTCACTTAATACAACTCCCCCAGATGTAGGAGGATGAAGTCAAATGGAGACCACATCTTCAAATAAAATGGGAGGGAataacacattttttatttttttttgaaaACAATCTTCATCAAGTGCATACCGATTACCCTAATGTTCCTTTGGAAAGGTCCTTATCGCGATTGCCGAGATTGCttatctctccctttcctctctttgGCAGAATTGCTACAGTACAGACCAGAGAGGTTTCTGtgacagagaagagagcgagagagacagcagatCCTGGAGAACACAGCGCTCATTACAACTCTCTGCTGCAGCTCCTCACAGGTATACACTGTCACTGAGAATACTAAATGAGGCCACAGCGCAGTCTCCTAGACAGGCTCAGCcatacaaaaaaacacacagattGGCCTAGAAAAGAAAATAAACATCCATTATGTGCAGGGTAGTACTATATAACAAACTAAACAACAATCTAAATGGTTCATTAAAAAACAACTTCACTCCCAAATAGGACGTGCACCAAGCAAAGATttgatctcaatcccattaaaTGGAGGCTGGGGTGTTGGAATGGATTAGCTGTAGGTAGGCTATTATTGGCCTGGAGTGGGGGAATAATTAATAGAATAATGGAAGGTACAATCCGGTATTGTTTTAGTCTCTGCTCTAATCCATAATACTATGTTACGTGACGAAACAGCCTGGGCCTCACCAACAAAGGCAACCTACTTCCCTTTCCCATATCCTCCAGTCATTAACATGACTGTATATGGAGTCAGTCTCGGCTGCGCAGAAATCAAAGTGTTTGCTGGGTAGGGGTTTCGGTTCAGCTCAGATGAAGTTAAAGAGCTGACGAGTCAGCAGCTCGGTGACAATTAGGTTGCACAGCACAATCAACTTCCTCCATGTTTATAGCCCCCATGACCCAAATTATACACTCTTTGGTGTGATTGTAATAAAAACAGGTAATTAGGGCCAAAGCAGGCAAAAGGTATTTTGATCCAAACAAAGTGTAGACTTACTTAGGATATGGAGTGTAAATGCTGAAACTGGGTTATTGGTCTGTTACGTGAATTATTGCAAAACAATTAGTGCCGTTTTAACCTCAAGTGGCACTCCTGTCTAACAACAGAGTCCCTTATGGTTTGTCCTGAAGTAGGTTAACATCTACCATTGTTCTCTTCACTCTAAAAGCATTTCAGCCCATTCAATTGACTACTCGTACATATGATCTTATAGGCTGTGGTTGGAAGACCTTCCAGGGGGCAGACAACCATTGGAGAGAAAAAGACAGTTCCAAGGCATTGGTGAAGTCCTATGACTGGAAATGATTGACAAAAGCTTGTAATATACATTCACTGAAGAGGTCCATGTTGTTCCTTTAAATAAAGAGGCGTAGAAGAAACTTTGGACTAACTAGCCTTGGAACATCCTTCAGTGTTGTACAGTAATGTCGGAGGGGCAAAATGTCAAATGTCCACTATGCATAATGTTTgtctataaaataaaataaaaaagccaAGGCGGCAACCATGTGGTGAATGTCACACCACCAGGTAAGGCCTCAAAGGTCAAAGGGAAGGGGTCAAAAGGtcctgtgtggggggggggttaaaggtTGCCCTCGTCCAGCATCTTATTGACACCATCGCAAATCCTCTGCAGGTGGTTGCGGTACACCTCAGAGGGGCCGTAGAGAGCTGCCAGGAAGTCACAGTCTGCGAATTGGTTGAACACGTGGTTGACCCGCAAGTGGCTCTTGGCTGTTAGGTGGCGGTTGATGGCCTGGTGCAGCAGCTCACGGCACTCATTCAGGATGGCGCTCATCACACGCCGGTCGAATGTGAACTCGATCTGGTGGAAGCTGACAGCTGTCATGGCCAGTGTGTGG

Function

NR:

description
tumor necrosis factor alpha-induced protein 8-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478336 False 543 lncRNA 0.48 2 59718709 59731791
TU478339 False 2401 lncRNA 0.43 1 59732059 59734459
TU478332 True 2244 lncRNA 0.43 1 59732216 59734459

Neighbor

gene id symbol gene type direction distance location
cope LOC106613672 coding downstream 4608 59710615 ~ 59714101 (-)
LOC110524188 LOC106613669 coding downstream 9017 59665915 ~ 59709692 (-)
LOC118964629 NA coding downstream 106671 59608382 ~ 59612038 (-)
LOC110524184 LOC106613666 coding downstream 155033 59468780 ~ 59563676 (-)
LOC110524182 LOC106613664 coding downstream 270512 59359886 ~ 59448197 (-)
LOC110524192 LOC106613675 coding upstream 11017 59745476 ~ 59754819 (-)
LOC110524193 LOC106613676 coding upstream 38302 59772761 ~ 59776656 (-)
LOC110524194 LOC106613679 coding upstream 53285 59787744 ~ 59801204 (-)
LOC118964630 NA coding upstream 170386 59904845 ~ 59914276 (-)
klf2a LOC106613686 coding upstream 244548 59979007 ~ 59981619 (-)
G422089 NA non-coding downstream 52821 59664718 ~ 59665888 (-)
G422088 NA non-coding downstream 54099 59663321 ~ 59664610 (-)
G421951 NA non-coding downstream 345104 59372985 ~ 59373605 (-)
G421950 NA non-coding downstream 345955 59372319 ~ 59372754 (-)
G421948 NA non-coding downstream 347210 59370649 ~ 59371499 (-)
G422138 NA non-coding upstream 5823 59740282 ~ 59740548 (-)
G422139 LOC106613674 non-coding upstream 6945 59741404 ~ 59741629 (-)
G422155 NA non-coding upstream 26491 59760950 ~ 59761159 (-)
G422157 NA non-coding upstream 27714 59762173 ~ 59762438 (-)
G422191 NA non-coding upstream 88964 59823423 ~ 59823649 (-)
lsg1 lsg1 other downstream 580452 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 682410 59026103 ~ 59036299 (-)
G420421 NA other downstream 1304566 58413128 ~ 58414143 (-)
G420193 NA other downstream 1604649 58112387 ~ 58114060 (-)
G419714 NA other downstream 2012773 57699745 ~ 57705936 (-)
G422347 NA other upstream 366306 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1324535 61058949 ~ 61081864 (-)
G424474 NA other upstream 1882411 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1915508 61649967 ~ 61651775 (-)
G424502 NA other upstream 1924574 61659033 ~ 61659585 (-)

Expression


Co-expression Network