G422207


Basic Information

Item Value
gene id G422207
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59848698 ~ 59919451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478427
GCACAGCAGTCACTCCGTCGGCGAGGAGATCGGGCAGGACAGACACGTCCTCTATCCGGTTTCATTTACAACTCGTCCTTGTCCTTCTTGGGatcttccccttcctcctcttccattGGGCTGTCATCGTCCTCCTCCTCTGGCTCatcatcctcatcttcatcccCCTCATCATCAGCAGTGTCCTTCttgctcttctcctcctcctctcttgctttcctctcctcctcctcctgtgcaTCCTTCATTTTCTTTTCTGGTTCCTGCTTCTCCTC
>TU478429
GCACAGCAGTCACTCCGTCGGCGAGGAGATCGGGCAGGACAGACACGTCCTCTATCCGGTTTCATTTACAACTCGTCCTTGTCCTTCTTGGGatcttccccttcctcctcttccattGGGCTGTCATCGTCCTCCTCCTCTGGCTCatcatcctcatcttcatcccCCTCATCATCAGCAGTGTCCTTCttgctcttctcctcctcctctcttgctttcctctcctcctcctcctCCTCATCTTCCT
>TU478426
GCACAGCAGTCACTCCGTCGGCGAGGAGATCGGGCAGGACAGACACGTCCTCTATCCGGTTTCATTTACAACTCGTCCTTGTCCTTCTTGGGatcttccccttcctcctcttccattGGGCTGTCATCGTCCTCCTCCTCTGGCTCatcatcctcatcttcatcccCCTCATCATCAGCAGTGTCCTTCttgctcttctcctcctcctctcttgctttcctctcctcctcctcctgtgcaTCCTTCATTTTCTTTTCTGGTTCCTTTGTAGCTCCCCATGTCTCGTTTCCAAACTCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU478427 False 275 lncRNA 0.53 2 59848698 59919451
TU478429 False 247 lncRNA 0.55 2 59880825 59919451
TU478426 True 297 lncRNA 0.53 2 59919015 59919451

Neighbor

gene id symbol gene type direction distance location
LOC110524194 LOC106613679 coding downstream 47494 59787744 ~ 59801204 (-)
LOC110524193 LOC106613676 coding downstream 72042 59772761 ~ 59776656 (-)
LOC110524192 LOC106613675 coding downstream 93879 59745476 ~ 59754819 (-)
cope LOC106613672 coding downstream 134597 59710615 ~ 59714101 (-)
LOC110524188 LOC106613669 coding downstream 139006 59665915 ~ 59709692 (-)
klf2a LOC106613686 coding upstream 59556 59979007 ~ 59981619 (-)
LOC110524206 ap1m1 coding upstream 197079 60116530 ~ 60134272 (-)
LOC110524209 LOC106613694 coding upstream 362923 60282374 ~ 60289431 (-)
lpl lpl coding upstream 378753 60298204 ~ 60306640 (-)
LOC110524214 LOC106613699 coding upstream 475573 60395024 ~ 60398862 (-)
G422206 NA non-coding downstream 2485 59845991 ~ 59846213 (-)
G422205 NA non-coding downstream 4435 59844060 ~ 59844263 (-)
G422200 NA non-coding downstream 6664 59841911 ~ 59842034 (-)
G422194 NA non-coding downstream 23655 59824705 ~ 59825043 (-)
G422191 NA non-coding downstream 25049 59823423 ~ 59823649 (-)
G422254 NA non-coding upstream 2735 59922186 ~ 59922634 (-)
G422255 NA non-coding upstream 8584 59928035 ~ 59930514 (-)
G422286 NA non-coding upstream 80715 60000166 ~ 60000436 (-)
G422294 NA non-coding upstream 95416 60014867 ~ 60015099 (-)
G422335 NA non-coding upstream 161244 60080695 ~ 60085314 (-)
lsg1 lsg1 other downstream 710441 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 812399 59026103 ~ 59036299 (-)
G420421 NA other downstream 1434555 58413128 ~ 58414143 (-)
G420193 NA other downstream 1734638 58112387 ~ 58114060 (-)
G419714 NA other downstream 2142762 57699745 ~ 57705936 (-)
G422347 NA other upstream 181314 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1139543 61058949 ~ 61081864 (-)
G424474 NA other upstream 1697419 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1730516 61649967 ~ 61651775 (-)
G424502 NA other upstream 1739582 61659033 ~ 61659585 (-)

Expression


Co-expression Network