G422208 (calr3)


Basic Information

Item Value
gene id G422208
gene name calr3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59915629 ~ 59917890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478431
CTTATATCCATGCTGGCTTATGTTCGATcaaatctcttcattcaaagaggCTCACCTCTGGCTTGGTGTCGGTAGGGTCGTCGATTTTGGCCCTGTCGTCCCAGTCCTCTGGCTTCTTGGCCTCGGGGTCCTTGACAGTCTTTGGGGGCAAAATGTCCCAGTCATCCTCCAGAGTGCCTGACTCCACCTTCTCATTGTTGATCTTCACCTCGTATGTCTGGTCCGGGTTCAGGATCAGAGTGTACAGATGTGTCAGCTCGTCATCCTGAAAAGACAAAAGGGGAGAACagcagaggttagaggtcagaccTGGCAGTGAACTGGACCACCAGGGACTTTCCCTCGTTGCTGAAGGGTTCAAAGCGGCTGGAGAGAGCATAGAAACGGGCATCCTGGCTGGTCTGGAGACCTTATCGGCCTCAGCGTCACCATAAAACTTCCCAGCAGTCAGTTTCCACTCGCCATagtctgacttgtgctctgatacaAGCCACCGACTCTTCCATGCATCTCCATCCTGAAATTGTTCCTTGAAGTATACAGTAGCGTCAATGGTGACAGCTACCGATGCAAAAACTGCTAATATTGCCACTGCGACCCTCATGCTTTCACCGTCCCGCTGTACAGGTAAACTGTGTGTGCTGCTTTTCACTGAAAGTCGGTTATAAacgctgaaggaaacaggtaatATGATCATTTCTAACTCCCTATTCCTGCACAGATGG

Function

symbol description
calr3 Predicted to enable several functions, including calcium ion binding activity; protein folding chaperone; and unfolded protein binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Located in endoplasmic reticulum lumen and nuclear envelope.

NR:

description
PREDICTED: calreticulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478431 True 725 lncRNA 0.50 4 59915629 59917890

Neighbor

gene id symbol gene type direction distance location
LOC118964630 NA coding downstream 1353 59904845 ~ 59914276 (-)
LOC110524194 LOC106613679 coding downstream 114425 59787744 ~ 59801204 (-)
LOC110524193 LOC106613676 coding downstream 138973 59772761 ~ 59776656 (-)
LOC110524192 LOC106613675 coding downstream 160810 59745476 ~ 59754819 (-)
cope LOC106613672 coding downstream 201528 59710615 ~ 59714101 (-)
klf2a LOC106613686 coding upstream 61117 59979007 ~ 59981619 (-)
LOC110524206 ap1m1 coding upstream 198640 60116530 ~ 60134272 (-)
LOC110524209 LOC106613694 coding upstream 364484 60282374 ~ 60289431 (-)
lpl lpl coding upstream 380314 60298204 ~ 60306640 (-)
LOC110524214 LOC106613699 coding upstream 477134 60395024 ~ 60398862 (-)
G422206 NA non-coding downstream 69416 59845991 ~ 59846213 (-)
G422205 NA non-coding downstream 71366 59844060 ~ 59844263 (-)
G422200 NA non-coding downstream 73595 59841911 ~ 59842034 (-)
G422194 NA non-coding downstream 90586 59824705 ~ 59825043 (-)
G422254 NA non-coding upstream 4296 59922186 ~ 59922634 (-)
G422255 NA non-coding upstream 10145 59928035 ~ 59930514 (-)
G422286 NA non-coding upstream 82276 60000166 ~ 60000436 (-)
G422294 NA non-coding upstream 96977 60014867 ~ 60015099 (-)
G422335 NA non-coding upstream 162805 60080695 ~ 60085314 (-)
lsg1 lsg1 other downstream 777372 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 879330 59026103 ~ 59036299 (-)
G420421 NA other downstream 1501486 58413128 ~ 58414143 (-)
G420193 NA other downstream 1801569 58112387 ~ 58114060 (-)
G419714 NA other downstream 2209693 57699745 ~ 57705936 (-)
G422347 NA other upstream 182875 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1141104 61058949 ~ 61081864 (-)
G424474 NA other upstream 1698980 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1732077 61649967 ~ 61651775 (-)
G424502 NA other upstream 1741143 61659033 ~ 61659585 (-)

Expression


Co-expression Network