G422254



Basic Information


Item Value
gene id G422254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59922186 ~ 59922634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU478482
GCTTACCTGCATAGATGAGCTTTTGCCCTGCGGCTGGATAGCCAACCTTCCCTTTCTCAACCTCAATCTTCTCCTTCAGGGCTTTTACCTGCCAATAACAGAATGACAGAATGACAAGCTGTTAAACAGGACTAGAGATAGAGCCCATTTAGTTGTATCTCTATTGGGCAGGACATTCTGATCATCTCTCCGGAACGTAACATGGTGACACATGATATGTCTCATCTCAGTCATAAAGCAGAATCCTTGAGGATTATGGGATTTGGAGTGAAAAATTGTAATTCACATTCAGTCATTACTTCACCTTGTTGTGAGTTCGTTCGAGGAAGTATACAGATACACTTATAGACAGATGCATTTCAATCGATCTACATTCCCTTATGTGATAAGCCATTAATGTATTTTTAAAGTTGACACTTACTACACGAGTTAATGATACAGTAataaac

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU478482 True 449 lncRNA 0.39 1 59922186 59922634

Neighbor


gene id symbol gene type direction distance location
LOC118964630 NA coding downstream 7910 59904845 ~ 59914276 (-)
LOC110524194 LOC106613679 coding downstream 120982 59787744 ~ 59801204 (-)
LOC110524193 LOC106613676 coding downstream 145530 59772761 ~ 59776656 (-)
LOC110524192 LOC106613675 coding downstream 167367 59745476 ~ 59754819 (-)
cope LOC106613672 coding downstream 208085 59710615 ~ 59714101 (-)
klf2a LOC106613686 coding upstream 56373 59979007 ~ 59981619 (-)
LOC110524206 ap1m1 coding upstream 193896 60116530 ~ 60134272 (-)
LOC110524209 LOC106613694 coding upstream 359740 60282374 ~ 60289431 (-)
lpl lpl coding upstream 375570 60298204 ~ 60306640 (-)
LOC110524214 LOC106613699 coding upstream 472390 60395024 ~ 60398862 (-)
G422207 NA non-coding downstream 2735 59848698 ~ 59919451 (-)
G422208 calr3 non-coding downstream 4296 59915629 ~ 59917890 (-)
G422206 NA non-coding downstream 75973 59845991 ~ 59846213 (-)
G422205 NA non-coding downstream 77923 59844060 ~ 59844263 (-)
G422255 NA non-coding upstream 5401 59928035 ~ 59930514 (-)
G422286 NA non-coding upstream 77532 60000166 ~ 60000436 (-)
G422294 NA non-coding upstream 92233 60014867 ~ 60015099 (-)
G422335 NA non-coding upstream 158061 60080695 ~ 60085314 (-)
G422342 NA non-coding upstream 171892 60094526 ~ 60094803 (-)
lsg1 lsg1 other downstream 783929 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 885887 59026103 ~ 59036299 (-)
G420421 NA other downstream 1508043 58413128 ~ 58414143 (-)
G420193 NA other downstream 1808126 58112387 ~ 58114060 (-)
G419714 NA other downstream 2216250 57699745 ~ 57705936 (-)
G422347 NA other upstream 178131 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1136360 61058949 ~ 61081864 (-)
G424474 NA other upstream 1694236 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1727333 61649967 ~ 61651775 (-)
G424502 NA other upstream 1736399 61659033 ~ 61659585 (-)

Expression



Co-expression Network