G421806


Basic Information

Item Value
gene id G421806
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60097763 ~ 60097995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU477976
ggatcaacgtgtacgtcagcgtgttccagttcccgccaatatccagcaacttcgtacagccattgaagaggagtgggtacaaccttccacaggccacaatcaacatcctgatcaactctatgtgaaggagatgtgtcgcactgcatgaggcaaatggtggtcacaccagatattgactggtgttctgatccacGCCCATATGTTTTTTAGgaccaacagatacatatctgtat

Function

NR:

description
methyl-CpG-binding domain protein 1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU477976 True 233 lncRNA 0.47 1 60097763 60097995

Neighbor

gene id symbol gene type direction distance location
LOC110524202 NA coding upstream 128817 59930644 ~ 59968946 (+)
LOC110524200 LOC106613684 coding upstream 167220 59920588 ~ 59930543 (+)
LOC110524201 LOC106613685 coding upstream 177587 59915582 ~ 59920176 (+)
LOC110524198 LOC106613681 coding upstream 193729 59889619 ~ 59904034 (+)
LOC110524197 LOC106613680 coding upstream 217194 59869690 ~ 59880569 (+)
malt2 LOC106613687 coding downstream 35241 60133236 ~ 60161934 (+)
LOC110524208 LOC106613692 coding downstream 67613 60165608 ~ 60180274 (+)
LOC118964531 NA coding downstream 125802 60223797 ~ 60267847 (+)
LOC110524211 tpm4 coding downstream 270396 60368391 ~ 60395175 (+)
LOC110524213 LOC106613698 coding downstream 300995 60398990 ~ 60407448 (+)
G421799 NA non-coding upstream 8654 60088632 ~ 60089109 (+)
G421788 NA non-coding upstream 19390 60077890 ~ 60078373 (+)
G421748 NA non-coding upstream 87933 60009355 ~ 60009830 (+)
G421731 NA non-coding upstream 109453 59988021 ~ 59988310 (+)
G421677 NA non-coding upstream 239298 59853434 ~ 59858465 (+)
G421811 NA non-coding downstream 11607 60109602 ~ 60109909 (+)
G421814 NA non-coding downstream 14640 60112635 ~ 60112855 (+)
G421825 NA non-coding downstream 38408 60136403 ~ 60136615 (+)
G421826 NA non-coding downstream 38887 60136882 ~ 60137183 (+)
G420634 NA other upstream 1153546 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 1680987 58411240 ~ 58418268 (+)
G419452 NA other upstream 2198115 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 2730426 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3139598 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 596262 60694220 ~ 60695905 (+)
G423922 NA other downstream 1623542 61721537 ~ 61722024 (+)
G424079 NA other downstream 2007528 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 2185157 62283054 ~ 62327772 (+)
G425224 NA other downstream 2947095 63045090 ~ 63051530 (+)

Expression


Co-expression Network