XLOC_023453 (pign)


Basic Information

Item Value
gene id XLOC_023453
gene name pign
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23687410 ~ 23716097 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046394
TGGTTTAGCAGGTCAGAACTCAAAGATACAAAAGCACcttaaaacagattaaaagcCCATGCGCGGGTTTTGCTTCAGGGCGTTTCGTTCCCGCGCACTCCTGCTCTGCCCGGTGCTTTCATTGACAGATTAACGTTACATGATACCTTTATATGTCTTCTGTCCACCTTCAACTAATCAGCTTTATGAATCTGTTTCAATCTCAAATTAGCAGAAAGTGTCAAAGGTCTGACTGGAGACAAGATGAAGATGGTGACATTCTTCGTTGTGGGACTCATTGTGCATGTAGTCTTCTTTCTCTGCatatttgacatttatttcaCATCTCCTCTTGTCCATGGAATGACTCCTCAGCGGGTCTCTCTGCCCCCTCCGGCCAAGCGCCTGGTGCTGTTTGTGGCAGATGGTTTGAGGGCCGACAGCCTCTTTAAGCCAGACGACAGTGGGACATCCAGGGCTCCTTACCTAAGGAGTGTGATTGAAGAGGGCGGCACATGGGGAGTTTCACACACACGGGTCCCTACTGAATCACGCCCAGGACATGTCGCTCTAATAGCAGGCTTTTATGAGGACGTTAGTGCTGTTGCCAAGGGCTGGAAGGAGAATCCAGTGGAGTTTGATTCTGTCTTTAATGAGAGCAGATATACCTGGTGTTGGGGAAGCCCTGATATATTGCCAATGTTTGCTAAAGGTGCCACTGGAGACCATGTCTACACTCACACTTACCCTCCAGAGCGAGAGGACTTCGCCTCCACTGATGCTTCCAGACTCGACACATGGGTGTTTGATGAAGTGAAGGATTTTCTCACTGCTGCCAAAAGCAATGAAACTTTACTAAAGAAGTTACATGAAGAACAAAACGTGTTTTTCCTTCATCTACTGGGGATTGACACCAATGGTCATGCCCACCGGCCCATGTCAAAGGAATGTCTAGAGAACATTGGTCTGGTTGATGCTGGTGTCGCTGACATTGTCACTGTGATGGATGACTTTTATGGCCATGATGGAAAAACGGCTTATGTTTTTACTTCTGACCATGGCATGACAAATTGGGGATCTCACGGTGCAGGACATCCCTCGGAGACTCTGACCCCGCTGGTAGTGTGGGGCGCTGGGGTTCAGAAGGCACAATGGGAGACCTCTCAGAAATATGAGGATAATTATTTAAAAGAATGGGGGTTAGAGAGCTACAGGAGAGTGGACGTCAATCAGGCTGATATTGCCCCACTAATGTCATCTCTTATAGGCATTCCCTTTCCTTTGAACTCTGTGGGGGTTTTACCGCTGAGTTACCTGAATAACAGCCAGCACTTTAAGGCTGAGAGCATGTATGCAAATGCTATTCAGATCTTGGAGCAGTTCAGGgTAAAATTggcacagaagaaagaaacaacgATATCGTTTTTGTTCACACCATACCAgCCCCTTACTGACTCTAAACAAGTGGATTTCATTCGTCAGGCAAGAGATTTGATCCAAAAAGGACGTTTTGACGAAGCAATTGTCTATTGTAAAGATCTGATCGCTCAGGCAATGGAGGGCTTGTCATATTATCACACATATGATCGTCTGTTTCTTGGAAGCAGTGTGGTCCTGGGTTTTATTGGTTGGACCTCATATGTGGTTTTATACATCCTGAAAACTCATGCTAGCCTACGCAAACCTCCAACTAACACGTCCATGGTGACTGAAAGGCTTCTGGGATGGGGATTTCTGTGCGTTGGTTTGCTGATGGCTTTGTTCTTGTTGGTTCAGTCCAGTCCTTGGTCGTACTACATCTACAGTTTAATGCCTGTGGCGGTGTGGTATGCTGTATTGAAAGAGTTTAAAACTCTTGTTGGTCTGGTTCGCTCGATTCCGTCATTACCACTCACCAAATGCTTCGGATATTTTGTACTGGTTGCATTTGGAATAGAGTTACTAgtcaTGAGTTTTTTTTATCGGGCCATGTTGTCCTTGGGCCTTGTGGTGTTGGCACTATGGCCTGTGGTTTCTGGCTTCTATACAAAAGCCAAGTTCAAGTCTCTGAGCTGGACGCTGAGTTGTCTCTCACTGGCTGTGTTTCCCCTGTTGCCTGTTGTGGGACGGGAACCCAACATAAACTATGTGATTAGTGCTGGAGGGTTGATCCTCTTTAACTCGTCCTCATTCCTCTGGTCTTCATGGAGAGACTCTCCTCTGATGCGAAGGGATCGTCAGCTCTTCATTTTCCAGATGGTGCAGGTGGCGCTGTGTGCTTATACTCTGACCAGCACCCACTCTAGTCTGCAGCTGAAGCAAGGCCTGCCGATCTTCAACCAGCTAGTTAGCTGGAGCACACTAGtttcctcCTTTTTGATACCATTGTTGAGTTCCACCAGACTCTTTCACAGACTTCTGAGTATCCTGATGTCATTGACGTGTGTCTACCTTCTCCTGAGTACAggGCATGAGGCTCTTTTTCCTCTGATGCTGTCGTGGCTTATGCTTGCATGGATTCACATTGAGCAGGAAGCCATGTCCAGACAAGGAAGTTCAAATCGAAATGAGctCTCCTGCATTGATTTTGCCGAAAATATCGACATCACCAAAGTCCGTCAGCTGAGATTGGACGACATTCGGAAATCTTACTTTTTTGTGTTTTTCATAATAATTGCATTCTTCGGCTGTGGAAATATTGCATCTATCAACAGTTTTGATCCAGCGTCAGTGTATTGCTTTCTGACCGTCTTCAATCCTTTCATCATGGGTGGTCTGCTGATGTGGAAGGTTTTAATCCCATTTGTAATTGTGATGTGCACATTCGAAAGCATTCAAGTGTCAACGCAGCTCTCCTCACGAAGTCTTTTCCTCATCGTACTTGTCATATCAGACTTGATGGCATTGCACTTCTTCTTCTTAGTTAAAGATTATGGAAGCTGGCTTGACATAGGGACTAGCATCAGTCATTATGTCATCGTAATGTCCATGACCATCTTCCTCATGTTGCTGAGTGTCATGACGCACATATTAACATCCAAGAAGATCCTCCTTGGACGGAGCCGAAAGATGCACTTTAGGTGACCCCCTCGTACCTGGATCTCCCCGTCTCATTGTTTacaaggtgcaaaaaaaaaaatcattgaacaTTGAACTGCACAATGATCTGACTGGTGTGGGGTCTTCCTGTTACTGGGAATTTCTTAACATCAGTATTGCTTAAGACAAATGACTTTGCATCATCCTGTCTTAAAAGCAAGAAACGCTCTGGTGTACTAATGTTTaggatttatgtttttaaatgtcagtgggaatttttacaataatttaaatgtactgtatGGTTTATGCCAAAGGACAGGAAAGGAATGTTACTGTACGGATGTGTCAACTGATATTAACTTGGATCTAATCCTTGTAAGGTATAACagtaaatgtgttatttgtttaatacagtattttattaatgtgatgtaaatatgttaaataatttattaacattaaacttataaattaaa
>TCONS_00046393
TGGTTTAGCAGGTCAGAACTCAAAGATACAAAAGCACcttaaaacagattaaaagcCCATGCGCGGGTTTTGCTTCAGGGCGTTTCGTTCCCGCGCACTCCTGCTCTGCCCGGTGCTTTCATTGACAGATTAACGTTACATGATACCTTTATATGTCTTCTGTCCACCTTCAACTAATCAGCTTTATGAATCTGTTTCAATCTCAAATTAGCAGAAAGTGTCAAAGGTCTGACTGGAGACAAGATGAAGATGGTGACATTCTTCGTTGTGGGACTCATTGTGCATGTAGTCTTCTTTCTCTGCatatttgacatttatttcaCATCTCCTCTTGTCCATGGAATGACTCCTCAGCGGGTCTCTCTGCCCCCTCCGGCCAAGCGCCTGGTGCTGTTTGTGGCAGATGGTTTGAGGGCCGACAGCCTCTTTAAGCCAGACGACAGTGGGACATCCAGGGCTCCTTACCTAAGGAGTGTGATTGAAGAGGGCGGCACATGGGGAGTTTCACACACACGGGTCCCTACTGAATCACGCCCAGGACATGTCGCTCTAATAGCAGGCTTTTATGAGGACGTTAGTGCTGTTGCCAAGGGCTGGAAGGAGAATCCAGTGGAGTTTGATTCTGTCTTTAATGAGAGCAGATATACCTGGTGTTGGGGAAGCCCTGATATATTGCCAATGTTTGCTAAAGGTGCCACTGGAGACCATGTCTACACTCACACTTACCCTCCAGAGCGAGAGGACTTCGCCTCCACTGATGCTTCCAGACTCGACACATGGGTGTTTGATGAAGTGAAGGATTTTCTCACTGCTGCCAAAAGCAATGAAACTTTACTAAAGAAGTTACATGAAGAACAAAACGTGTTTTTCCTTCATCTACTGGGGATTGACACCAATGGTCATGCCCACCGGCCCATGTCAAAGGAATGTCTAGAGAACATTGGTCTGGTTGATGCTGGTGTCGCTGACATTGTCACTGTGATGGATGACTTTTATGGCCATGATGGAAAAACGGCTTATGTTTTTACTTCTGACCATGGCATGACAAATTGGGGATCTCACGGTGCAGGACATCCCTCGGAGACTCTGACCCCGCTGGTAGTGTGGGGCGCTGGGGTTCAGAAGGCACAATGGGAGACCTCTCAGAAATATGAGGATAATTATTTAAAAGAATGGGGGTTAGAGAGCTACAGGAGAGTGGACGTCAATCAGGCTGATATTGCCCCACTAATGTCATCTCTTATAGGCATTCCCTTTCCTTTGAACTCTGTGGGGGTTTTACCGCTGAGTTACCTGAATAACAGCCAGCACTTTAAGGCTGAGAGCATGTATGCAAATGCTATTCAGATCTTGGAGCAGTTCAGGgTAAAATTggcacagaagaaagaaacaacgATATCGTTTTTGTTCACACCATACCAgCCCCTTACTGACTCTAAACAAGTGGATTTCATTCGTCAGGCAAGAGATTTGATCCAAAAAGGACGTTTTGACGAAGCAATTGTCTATTGTAAAGATCTGATCGCTCAGGCAATGGAGGGCTTGTCATATTATCACACATATGATCGTCTGTTTCTTGGAAGCAGTGTGGTCCTGGGTTTTATTGGTTGGACCTCATATGTGGTTTTATACATCCTGAAAACTCATGCTAGCCTACGCAAACCTCCAACTAACACGTCCATGGTGACTGAAAGGCTTCTGGGATGGGGATTTCTGTGCGTTGGTTTGCTGATGGCTTTGTTCTTGTTGGTTCAGTCCAGTCCTTGGTCGTACTACATCTACAGTTTAATGCCTGTGGCGGTGTGGTATGCTGTATTGAAAGAGTTTAAAACTCTTGTTGGTCTGGTTCGCTCGATTCCGTCATTACCACTCACCAAATGCTTCGGATATTTTGTACTGGTTGCATTTGGAATAGAGTTACTAgtcaTGAGTTTTTTTTATCGGGCCATGTTGTCCTTGGGCCTTGTGGTGTTGGCACTATGGCCTGTGGTTTCTGGCTTCTATACAAAAGCCAAGTTCAAGTCTCTGAGCTGGACGCTGAGTTGTCTCTCACTGGCTGTGTTTCCCCTGTTGCCTGTTGTGGGACGGGAACCCAACATAAACTATGTGATTAGTGCTGGAGGGTTGATCCTCTTTAACTCGTCCTCATTCCTCTGGTCTTCATGGAGAGACTCTCCTCTGATGCGAAGGGATCGTCAGCTCTTCATTTTCCAGATGGTGCAGGTGGCGCTGTGTGCTTATACTCTGACCAGCACCCACTCTAGTCTGCAGCTGAAGCAAGGCCTGCCGATCTTCAACCAGCTAGTTAGCTGGAGCACACTAGtttcctcCTTTTTGATACCATTGTTGAGTTCCACCAGACTCTTTCACAGACTTCTGAGTATCCTGATGTCATTGACGTGTGTCTACCTTCTCCTGAGTACAggGCATGAGGCTCTTTTTCCTCTGATGCTGTCGTGGCTTATGCTTGCATGGATTCACATTGAGCAGGAAGCCATGTCCAGACAAGGAAGTTCAAATCGAAATGAGctCTCCTGCATTGATTTTGCCGAAAATATCGACATCACCAAAGTCCGTCAGCTGAGATTGGACGACATTCGGAAATCTTACTTTTTTGTGTTTTTCATAATAATTGCATTCTTCGGCTGTGGAAATATTGCATCTATCAACAGTTTTGATCCAGCGTCAGTGTATTGCTTTCTGACCGTCTTCAATCCTTTCATCATGGGTGGTCTGCTGATGTGGAAGGTTTTAATCCCATTTGTAATTGTGATGTGCACATTCGAAAGCATTCAAGTGTCAACGCAGCTCTCCTCACGAAGTCTTTTCCTCATCGTACTTGTCATATCAGACTTGATGGCATTGCACTTCTTCTTCTTAGTTAAAGATTATGGAAGCTGGCTTGACATAGGGACTAGCATCAGTCATTATGTCATCGTAATGTCCATGACCATCTTCCTCATGTTGCTGAGTGTCATGACGCACATATTAACATCCAAGAAGATCCTCCTTGGACGGAGCCGAAAGATGCACTTTAGGTGACCCCCTCGTACCTGGATCTCCCCGTCTCATTGTTTacaaggtgcaaaaaaaaaaatcattgaacaTTGAACTGCACAATGATCTGACTGGTGTGGGGTCTTCCTGTTACTGGGAATTTCTTAACATCAGTATTGCTTAAGACAAATGACTTTGCATCATCCTGTCTTAAAAGCAAGAAACGCTCTGGTGTACTAATGTTTaggatttatgtttttaaatgtcagtgggaatttttacaataatttaaatgtactgtatGGTTTATGCCAAAGGACAGGAAAGGAATGTTACTGTACGGATGTGTCAACTGATATTAACTTGGATCTAATCCTTGTAAGGTATAACagtaaatgtgttatttgtttaatacagtattttattaatgtgatgtaaatatgttaaataatttattaacattaaacttataaattaaa

Function

symbol description
pign Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 1. Orthologous to human PIGN (phosphatidylinositol glycan anchor biosynthesis class N).

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0051377 mannose-ethanolamine phosphotransferase activity molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

ZFIN:

id description
ZDB-GENE-080204-114 Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 1. Orthologous to human PIGN (phosphatidylinositol glycan anchor biosynthesis class N).

Ensembl:

ensembl_id ENSDARG00000077532

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046394 False 3476 mRNA 0.44 29 23687410 23716097
TCONS_00046393 True 3476 mRNA 0.44 29 23687410 23716097

Neighbor

gene id symbol gene type direction distance location
XLOC_023452 hnf4g coding downstream 11964 23646644 ~ 23675446 (-)
XLOC_023451 NA coding downstream 44505 23383112 ~ 23642905 (-)
XLOC_023449 zfhx4 coding downstream 363884 23241444 ~ 23323526 (-)
XLOC_023450 CT573302.1 coding downstream 414051 23273242 ~ 23273359 (-)
XLOC_023448 NA coding downstream 469380 22878941 ~ 23218030 (-)
XLOC_023454 MCMDC2 coding upstream 13811 23729908 ~ 23758003 (-)
XLOC_023455 SGK3 coding upstream 42413 23758510 ~ 23784701 (-)
XLOC_023456 rrs1 coding upstream 121422 23837519 ~ 23839647 (-)
XLOC_023457 arxa coding upstream 220732 23936829 ~ 23942722 (-)
XLOC_023458 ndufb4 coding upstream 254959 23971056 ~ 23977285 (-)
XLOC_023665 dre-mir-735 misc upstream 14461864 38177961 ~ 38178027 (-)
XLOC_023446 CT573489.1 non-coding downstream 1315310 22371986 ~ 22372100 (-)
XLOC_023445 AL590147.1 non-coding downstream 1378352 22308944 ~ 22309058 (-)
XLOC_023461 NA non-coding upstream 379219 24095316 ~ 24098879 (-)
XLOC_023466 NA non-coding upstream 700227 24416324 ~ 24503022 (-)
XLOC_023467 NA non-coding upstream 776106 24492203 ~ 24492517 (-)
XLOC_023468 NA non-coding upstream 837696 24553793 ~ 24695757 (-)
XLOC_023471 NA non-coding upstream 1084679 24800776 ~ 24829401 (-)

Expression


Co-expression Network