G421844 (LOC105030512)


Basic Information

Item Value
gene id G421844
gene name LOC105030512
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60194223 ~ 60194784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478021
ATTCTGTCCCTAGGGGTCCACTATcctggaccctccacctccaaatcaatcctgcttcagagtacaggccttggtgtaacgctcattccttcaatgataaacgcaaatccgaccatcacccctggtgagacaaaaccgcgactcgtcggtgaagagcactttttgccagtcctgtctggtccaacgacggtgggtttgtgcccatagccaacgttgttgccgatgatgtctggtgaggacctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgcgtacagtctgagcactgatggagggattgttcgttcctggtgtaacttgggcagttgttgccatcctgtacctgtcccgcaggtgtgatgttcggatgtaccgatcctgtgcaggtgttgttacacgtggtctgccactgcgaggacgataagctgtccgtcctgtctccctgtagcgctgtcatatgcgtctcacagtacagatgttgcaatttattgccctagccacatctgcagtcctcatgcctccttgcagcatgcctaaggca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478021 True 562 lncRNA 0.53 1 60194223 60194784

Neighbor

gene id symbol gene type direction distance location
LOC110524208 LOC106613692 coding upstream 13949 60165608 ~ 60180274 (+)
malt2 LOC106613687 coding upstream 32289 60133236 ~ 60161934 (+)
LOC110524202 NA coding upstream 225277 59930644 ~ 59968946 (+)
LOC110524200 LOC106613684 coding upstream 263680 59920588 ~ 59930543 (+)
LOC110524201 LOC106613685 coding upstream 274047 59915582 ~ 59920176 (+)
LOC118964531 NA coding downstream 29013 60223797 ~ 60267847 (+)
LOC110524211 tpm4 coding downstream 173607 60368391 ~ 60395175 (+)
LOC110524213 LOC106613698 coding downstream 204206 60398990 ~ 60407448 (+)
hsh2d LOC106613697 coding downstream 212769 60407553 ~ 60411038 (+)
LOC110524215 LOC106613700 coding downstream 232326 60427110 ~ 60432323 (+)
G421843 NA non-coding upstream 467 60193356 ~ 60193756 (+)
G421840 NA non-coding upstream 6813 60186996 ~ 60187410 (+)
G421831 NA non-coding upstream 9418 60182623 ~ 60184805 (+)
G421826 NA non-coding upstream 57040 60136882 ~ 60137183 (+)
G421846 NA non-coding downstream 1275 60196059 ~ 60196347 (+)
G421861 NA non-coding downstream 15151 60209935 ~ 60210213 (+)
G421862 NA non-coding downstream 15722 60210506 ~ 60210755 (+)
G421867 NA non-coding downstream 102401 60297185 ~ 60298566 (+)
G422500 NA non-coding downstream 127873 60322657 ~ 60322919 (+)
G420634 NA other upstream 1250006 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 1777447 58411240 ~ 58418268 (+)
G419452 NA other upstream 2294575 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 2826886 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3236058 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 499473 60694220 ~ 60695905 (+)
G423922 NA other downstream 1526753 61721537 ~ 61722024 (+)
G424079 NA other downstream 1910739 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 2088368 62283054 ~ 62327772 (+)
G425224 NA other downstream 2850306 63045090 ~ 63051530 (+)

Expression


Co-expression Network