G423057 (tpm4)


Basic Information

Item Value
gene id G423057
gene name tpm4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60368429 ~ 60393194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU479360
TGGTTTAGACGTAGGAAAGATTAGGCTTTTAATGAGTTTCATTTGCACAGTGAGATGGACAGAAGGCACAGAGAACGGCCTGTGTTTCTGGAAGCGAACCCTGGGacacagtaggcctacagtgggAAAGGGTGAGAGGACAGACACCCTAGAGGCAGcatgagacagacaggaagagacatcTACAAGGAGGTCATGTCATTGAGGGCATGGTCCAGCTCCTCGCTGATTGCCTTGTACTTCAGCTTCTGAGCGTACAGTTCATCTGGAGGTCAAAGCGCTTCCAGGTCGTCGATGGACTTTTCGAGTTTGGCCACAGTCCTCTCTGCAAACTCTGCACGAGTCTCAGCCTGGGGGACACAGAGGGAGTGGGAGGGCGTCAGAACAAGACGCCATCTTTGACATGGAGCAAATTGGTTTACTACTGTATGAATTAAGAATCAGATGCCAGCAGTTCCTTACCTCCTTCAGCTTGTCACTAAGAACCTTGATCTCCTCCTCATACTTGTCCTCTTTTTCTGAGTACTGTCAAAATACAAGTCTGTTACAGGCAAGCTCTGAACTCTTGAACATGCCTGAACTCCCAAGACAGATTCAGACATATTAGCATGAAAGTGCACAGAGAATGATGGTCTTGCAGGACTGTGTGTCAACCATGCTTAGTTGTAACACAACTCTTCAGGTGTGATCAAACTGGCCATGTGTTGGTATAAGGAACACATTGTGCTGCGATGCCAAAGAGAAGGACATTGATTTAATCAGCACAGAGCAACTGCTTAAGTGGCTAAGGTGGAATCATGCGGCGTGACTGGCACTAGAGCGGCTGGGTCGGAACGCAGAGACATATCTGTGCTGTTTTAGGACTATTTCGCCGTCATGCGTCATCAACATTATCATAAAGAAATCAACGTCCAGTTTGTCCGGTTGATAACAGGGTCTTTGCTCTGACGTCTGTGAAGGTGAAAGTGCGGCAGGCAGTGATTATACTCTAAACTACTCTGCTTTCACATCAGCCTTGTCGAGTCAACTCCTGATAGATACAAAGGCTCGGGACAGCCCTTAAGTGGGTGAACTAACCCTGAACATGCAGATATCCAGGATAAGTTCAAATCATGTACTTTGAATTGTGAATGGTGAGCTACACCGCACTTCGCACTTATCCAACGTTCACTTATCAGCAGTTGACTGCATTTACTTGTATGATGTAATAGTGTGCACACTGACCTTCTCAGACGAGGCTTCTAGGGACTTGAGGTTGTTGGTCACATTTTTCAACTCCTCCTCCAGGTCACTGCATTTACTACAGGTGGAGAAAGGAAGAAAAGTACTTTGCTTTGACATCGTAATAGCTACACAAGCCTGGAAAAACCTTCAAGTTACTGATGTCCATTTTAGCTTATGGCAGAAAATCCCCATTTTTAACTAGACactgttttttaaatgttaattaaaaaaaagtgttatgaaaCTCCTTACAAACCTTAGTCTTTGACTCATCTATTTCtaaataggaggagaagagacccCATCACAGAGGTCCTAACCCCCAATTCCCCTTTGTCATTCCAGCGTAATAGGCGGACTGTGCTGCACTTACAGTTCTGAGACCTCTGccctctcctcagctctctccagctctccctccAAGATCACCAGCTTACGGGCACCTCCTCGTATTTGCGGTCGGCCTCCTCAGCGATGTGCTTGGCCTCCTTCAGCTGCATCTCCTggatctccatcttctcctcTCTCGCTCTCATCTGCGGCCTTCTCTGCCTCCTCCAGTTTCTGCAGCGCggtagacagcctctcctgggccCGGTCCAACTCCTCCTCCACTAGCTGGATCCTGCGGTTCAGACCCGCCACATCACCCTCCGcGTCTGCGGCGGTCTTCTCAGACTGTTCCAGTTTCTCCTGGGCATCTTTGAGGGCCTCAGAGTATTTGTCCAACTCATCTTCAGTCCCCTTCAAATTCTTCTGCAGGCTCAGCAGCTCGTCTTCCAGCTGTTTGCACTTGTCCTCCGCTGCCTTCTTATCGGTCTCGGCCTGCTCTGCGCGGTCGATGGCGTTCTCCTTGTCCAGCTTCAGCATCTGCATCTTCTTCTTGATGGCCTCCATGGTGCTTGGTTAGATTGTGCTCACTGAGATGAGAAATGCAGCTGAGAAAGTTGAGATGTCACCCCTGTAGTTTGAGACAGTGTCTGTCCTGTTCAGTACTGGAGCAAACTCCACTGGAACCTGCGTCCAcaagagtcagagggatagagagacaaacagaggtagaaacgagagagagcgagggagagcaagggagtgagagagagcgagggagcacGCGCAG
>TU479361
TGGTTTAGACGTAGGAAAGATTAGGCTTTTAATGAGTTTCATTTGCACAGTGAGATGGACAGAAGGCACAGAGAACGGCCTGTGTTTCTGGAAGCGAACCCTGGGacacagtaggcctacagtgggAAAGGGTGAGAGGACAGACACCCTAGAGGCAGcatgagacagacaggaagagacatcTACAAGGAGGTCATGTCATTGAGGGCATGGTCCAGCTCCTCGCTGATTGCCTTGTACTTCAGCTTCTGAGCGTACAGTTCATCTGGAGGTCAAAGCGCAGCAGGAAGTAGTGCAGGTAAGGCCCAAGGGAAGCTTCCAGGTCGTCGATGGACTTTTCGAGTTTGGCCACAGTCCTCTCTGCAAACTCTGCACGAGTCTCAGCCTGGGGGACCTCCTTCAGCTTGTCACTAAGAACCTTGATCTCCTCCTCATACTTGTCCTCTTTTTCTGAGTACTGTCAAAATACAAGTCTGTTACAGGCAAGCTCTGAACTCTTGAACATGCCTGAACTCCCAAGACAGATTCAGACATATTAGCATGAAAGTGCACAGAGAATGATGGTCTTGCAGGACTGTGTGTCAACCATGCTTAGTTGTAACACAACTCTTCAGGTGTGATCAAACTGGCCATGTGTTGGTATAAGGAACACATTGTGCTGCGATGCCAAAGAGAAGGACATTGATTTAATCAGCACAGAGCAACTGCTTAAGTGGCTAAGGTGGAATCATGCGGCGTGACTGGCACTAGAGCGGCTGGGTCGGAACGCAGAGACATATCTGTGCTGTTTTAGGACTATTTCGCCGTCATGCGTCATCAACATTATCATAAAGAAATCAACGTCCAGTTTGTCCGGTTGATAACAGGGTCTTTGCTCTGACGTCTGTGAAGGTGAAAGTGCGGCAGGCAGTGATTATACTCTAAACTACTCTGCTTTCACATCAGCCTTGTCGAGTCAACTCCTGATAGATACAAAGGCTCGGGACAGCCCTTAAGTGGGTGAACTAACCCTGAACATGCAGATATCCAGGATAAGTTCAAATCATGTACTTTGAATTGTGAATGGTGAGCTACACCGCACTTCGCACTTATCCAACGTTCACTTATCAGCAGTTGACTGCATTTACTTGTATGATGTAATAGTGTGCACACTGACCTTCTCAGACGAGGCTTCTAGGGACTTGAGGTTGTTGGTCACATTTTTCAACTCCTCCTCCAGGTCACTGCATTTACTACAGGTGGAGAAAGGAAGAAAAGTACTTTGCTTTGACATCGTAATAGCTACACAAGCCTGGAAAAACCTTCAAGTTACTGATGTCCATTTTAGCTTATGGCAGAAAATCCCCATTTTTAACTAGACactgttttttaaatgttaattaaaaaaaagtgttatgaaaCTCCTTACAAACCTTAGTCTTTGACTCATCTATTTCtaaataggaggagaagagacccCATCACAGAGGTCCTAACCCCCAATTCCCCTTTGTCATTCCAGCGTAATAGGCGGACTGTGCTGCACTTACAGTTCTGAGACCTCTGccctctcctcagctctctccagctctccctccAAGATCACCAGCTTACGGGCACCTCCTCGTATTTGCGGTCGGCCTCCTCAGCGATGTGCTTGGCCTCCGCTGCCTTCTTATCGGTCTCGGCCTGCTCTGCGCGGTCGATGGCGTTCTCCTTGTCCAGCTTCAGCATCTGCATCTTCTTCTTGATGGCCTCCATGGTGCTTGGTTAGATTGTGCTCACTGAGATGAGAAATGCAGCTGAGAAAGTTGAGATGTCACCCCTGTAGTTTGAGACAGTGTCTGTCCTGTTCAGTACTGGAGCAAACTCCACTGGAACCTGCGTCCAcaagagtcagagggatagagagacaaacagaggtagaaacgagagagagcgagggagagcaagggagtgagagagagcgagggagcacGCGCAG
>TU479359
TGGTTTAGACGTAGGAAAGATTAGGCTTTTAATGAGTTTCATTTGCACAGTGAGATGGACAGAAGGCACAGAGAACGGCCTGTGTTTCTGGAAGCGAACCCTGGGacacagtaggcctacagtgggAAAGGGTGAGAGGACAGACACCCTAGAGGCAGcatgagacagacaggaagagacatcTACAAGGAGGTCATGTCATTGAGGGCATGGTCCAGCTCCTCGCTGATTGCCTTGTACTTCAGCTTCTGAGCGTACAGTTCTTCCAGGTCGTCGATGGACTTTTCGAGTTTGGCCACAGTCCTCTCTGCAAACTCTGCACGAGTCTCAGCCTGGGGGACACAGAGGGAGTGGGAGGGCGTCAGAACAAGACGCCATCTTTGACATGGAGCAAATTGGTTTACTACTGTATGAATTAAGAATCAGATGCCAGCAGTTCCTTACCTCCTTCAGCTTGTCACTAAGAACCTTGATCTCCTCCTCATACTTGTCCTCTTTTTCTGAGTACTGTCAAAATACAAGTCTGTTACAGGCAAGCTCTGAACTCTTGAACATGCCTGAACTCCCAAGACAGATTCAGACATATTAGCATGAAAGTGCACAGAGAATGATGGTCTTGCAGGACTGTGTGTCAACCATGCTTAGTTGTAACACAACTCTTCAGGTGTGATCAAACTGGCCATGTGTTGGTATAAGGAACACATTGTGCTGCGATGCCAAAGAGAAGGACATTGATTTAATCAGCACAGAGCAACTGCTTAAGTGGCTAAGGTGGAATCATGCGGCGTGACTGGCACTAGAGCGGCTGGGTCGGAACGCAGAGACATATCTGTGCTGTTTTAGGACTATTTCGCCGTCATGCGTCATCAACATTATCATAAAGAAATCAACGTCCAGTTTGTCCGGTTGATAACAGGGTCTTTGCTCTGACGTCTGTGAAGGTGAAAGTGCGGCAGGCAGTGATTATACTCTAAACTACTCTGCTTTCACATCAGCCTTGTCGAGTCAACTCCTGATAGATACAAAGGCTCGGGACAGCCCTTAAGTGGGTGAACTAACCCTGAACATGCAGATATCCAGGATAAGTTCAAATCATGTACTTTGAATTGTGAATGGTGAGCTACACCGCACTTCGCACTTATCCAACGTTCACTTATCAGCAGTTGACTGCATTTACTTGTATGATGTAATAGTGTGCACACTGACCTTCTCAGACGAGGCTTCTAGGGACTTGAGGTTGTTGGTCACATTTTTCAACTCCTCCTCCAGGTCACTGCATTTACTACAGGTGGAGAAAGGAAGAAAAGTACTTTGCTTTGACATCGTAATAGCTACACAAGCCTGGAAAAACCTTCAAGTTACTGATGTCCATTTTAGCTTATGGCAGAAAATCCCCATTTTTAACTAGACactgttttttaaatgttaattaaaaaaaagtgttatgaaaCTCCTTACAAACCTTAGTCTTTGACTCATCTATTTCtaaataggaggagaagagacccCATCACAGAGGTCCTAACCCCCAATTCCCCTTTGTCATTCCAGCGTAATAGGCGGACTGTGCTGCACTTACAGTTCTGAGACCTCTGccctctcctcagctctctccagctctccctccAAGATCACCAGCTTACGGGCACCTCCTCGTATTTGCGGTCGGCCTCCTCAGCGATGTGCTTGGCCTCCTTCAGCTGCATCTCCTggatctccatcttctcctcGTCCTTAGAGGCTCTGTTCTCTATCACCTTCATTCCTCTGATTGGACAGGACACACTCTCGCTCTCATCTGCGGCCTTCTCTGCCTCCTCCAGTTTCTGCAGCGCggtagacagcctctcctgggccCGGTCCAACTCCTCCTCCACTAGCTGGATCCTGCGGTTCAGACCCGCCACATCACCCTCCGcctgggagaagagagggggaagaggggtcAAAGGTTAGACAGATATCAGGGTCACACTCACATCGTAACGCTGGTTGTACTAAATTGGATGCTCTTCACTCGATAAACAATCCACGTTGTAGAAAGCAAACAGAAAAGCAAACATTTATTTAGTCCATAAGCATATCCACCTCCCAGCGAACTGACTCCAGACCAGTGCAATGGAAGTTCTCCAGCAAACTCAGACTCACTCAGGCCCTACTACTACTTATCCCACAGTTCAGTACAGCACCCGCAGGCCTGCCTCTGGCTGACCATGACCAGACCCATTTTTACATAACCTGCAGTTACTCTCCTCCTAATTACAAGGCGTGTTGACAAAGGGAGCTGCCCTCCACTGCCCTCTATCACTTGGTCCTATCTCCAGCCAGTCAGTCTTTCAGTCAGATAGTTACCATGGGTGTGAGGACTGAACATGAGGCCTGCTTGCTAGAGATGCTGTCTCAGAGGCCAGTAAAACACACGTTAGGGCTAGGGCCTGGAATAAAAGGGCCACAGAGAGGGAGGTTTCCAGTTGGAGAGGGAGCTAACAGAGCACAGAGGAAAAGGGTAATTAGGAGCTATTTGTGCAGAGTGAGTGCCATTCCATTTTCTCATGGGCTGGATATTCCAACTTTACTCTGGGCTGACTGTGGGAGAGAGACATGGCTTCCTACTCTGCTCTGGGCTGACTGTGGGAGAGAGACGTGGcttcctgctctgctctgggctGACTGTGGGAG

Function

symbol description
tpm4 Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Involved in osteoblast differentiation. Located in stress fiber.

NR:

description
tropomyosin alpha-4 chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU479360 False 2344 lncRNA 0.49 6 60368429 60393194
TU479361 False 1963 lncRNA 0.48 5 60368429 60393194
TU479359 True 2679 lncRNA 0.48 4 60387136 60393194

Neighbor

gene id symbol gene type direction distance location
lpl lpl coding downstream 61789 60298204 ~ 60306640 (-)
LOC110524209 LOC106613694 coding downstream 78998 60282374 ~ 60289431 (-)
LOC110524206 ap1m1 coding downstream 234157 60116530 ~ 60134272 (-)
klf2a LOC106613686 coding downstream 386810 59979007 ~ 59981619 (-)
LOC118964630 NA coding downstream 454153 59904845 ~ 59914276 (-)
LOC110524214 LOC106613699 coding upstream 1830 60395024 ~ 60398862 (-)
LOC118964632 NA coding upstream 20969 60414163 ~ 60426534 (-)
ccl44 LOC106613702 coding upstream 66653 60459847 ~ 60462194 (-)
LOC110524218 LOC106613703 coding upstream 78118 60471312 ~ 60476448 (-)
LOC110524219 LOC106613704 coding upstream 116485 60509679 ~ 60513480 (-)
G423073 NA non-coding downstream 5483 60360590 ~ 60362946 (-)
G422481 NA non-coding downstream 58358 60308829 ~ 60310071 (-)
G422474 NA non-coding downstream 71942 60296174 ~ 60296487 (-)
G422471 NA non-coding downstream 74721 60293502 ~ 60293708 (-)
G422468 NA non-coding downstream 87983 60280128 ~ 60280446 (-)
G423095 NA non-coding upstream 28690 60421884 ~ 60422186 (-)
G423098 NA non-coding upstream 31681 60424875 ~ 60425198 (-)
G423099 NA non-coding upstream 32382 60425576 ~ 60425946 (-)
G423100 NA non-coding upstream 32827 60426021 ~ 60426387 (-)
G422347 NA other downstream 267373 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1230172 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1332130 59026103 ~ 59036299 (-)
G420421 NA other downstream 1954286 58413128 ~ 58414143 (-)
G420193 NA other downstream 2254369 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 665800 61058949 ~ 61081864 (-)
G424474 NA other upstream 1223676 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1256773 61649967 ~ 61651775 (-)
G424502 NA other upstream 1265839 61659033 ~ 61659585 (-)
G424649 NA other upstream 1495004 61888198 ~ 61927422 (-)

Expression


Co-expression Network