G422562


Basic Information

Item Value
gene id G422562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60422156 ~ 60422600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478813
GGCTTGCTACATGGTATCAGTTTTAGTAAGggtttgtgtgtctgtgctaACCATCATACACAGCCTATAGGCTATTATGTGATGATGCGTTACCTTGATTGCTACTTCAATTGAGTTTTGTGTgtctgggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggggctgCCGAGATGCAGCTGTGTATGAAGTCTCTCTGGTGACAGTGTTCTAGGTGTTGGTCGAGAGCTGGGAGAGTTCAACGTGACTGTGGAAAGGGCCAGAGCGGGGAGCACCCCTTATACTGCATGCACACAGCCATGGAGCTATCAACAACACTCCTTGTGGTACAGCCATTACTCGTAAGAC

Function

NR:

description
ciliogenesis-associated TTC17-interacting protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478813 True 445 lncRNA 0.49 1 60422156 60422600

Neighbor

gene id symbol gene type direction distance location
hsh2d LOC106613697 coding upstream 11118 60407553 ~ 60411038 (+)
LOC110524213 LOC106613698 coding upstream 14708 60398990 ~ 60407448 (+)
LOC110524211 tpm4 coding upstream 26981 60368391 ~ 60395175 (+)
LOC118964531 NA coding upstream 154309 60223797 ~ 60267847 (+)
LOC110524208 LOC106613692 coding upstream 241882 60165608 ~ 60180274 (+)
LOC110524215 LOC106613700 coding downstream 4510 60427110 ~ 60432323 (+)
LOC110524216 LOC106613701 coding downstream 13163 60435763 ~ 60452642 (+)
LOC110522875 NA coding downstream 57568 60480168 ~ 60484430 (+)
ctns LOC106613706 coding downstream 111933 60534533 ~ 60543487 (+)
LOC110524221 ranbp3 coding downstream 123581 60546181 ~ 60566583 (+)
G422561 NA non-coding upstream 512 60421431 ~ 60421644 (+)
G422514 NA non-coding upstream 3744 60331178 ~ 60418412 (+)
G422500 NA non-coding upstream 99237 60322657 ~ 60322919 (+)
G421867 NA non-coding upstream 123590 60297185 ~ 60298566 (+)
G421862 NA non-coding upstream 211401 60210506 ~ 60210755 (+)
G422563 NA non-coding downstream 950 60423550 ~ 60423839 (+)
G422566 NA non-coding downstream 10611 60433211 ~ 60433863 (+)
G422570 NA non-coding downstream 21712 60444312 ~ 60444602 (+)
G422612 NA non-coding downstream 79452 60502052 ~ 60502319 (+)
G422618 NA non-coding downstream 87084 60509684 ~ 60573995 (+)
G420634 NA other upstream 1477939 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2005380 58411240 ~ 58418268 (+)
G419452 NA other upstream 2522508 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3054819 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3463991 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 271657 60694220 ~ 60695905 (+)
G423922 NA other downstream 1298937 61721537 ~ 61722024 (+)
G424079 NA other downstream 1682923 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1860552 62283054 ~ 62327772 (+)
G425224 NA other downstream 2622490 63045090 ~ 63051530 (+)

Expression


Co-expression Network