G422618


Basic Information

Item Value
gene id G422618
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60509684 ~ 60573995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478878
TTTGTTATCATTTTTTGCTTTATTACAAATGTGAAGTTATACAAATATTGCTTTTAACACATAGTACTGATAGAAAAATATACTATacatacaaagtatgtggacaccctttcaaagtGGATTCgtctatttcaaccacacctgttgctgacaagtgtataaaatggagcacacagccatgcaatctccaaagacaaacgttggcagtagaatggccttactgaagagctcagtgactttcaacgtggcatcatagaatgctacctttccaacaagtcagttcgggAAATTTCTGCCCTACTTGAGCTACCCCGGGcaactttaagtgctgttattgtgaagtggaaacatctaggagcaaaaACGGCTCAGCAGTAAAggggtaggccacacaagctcacagaatgcgAAGCACTCAGCGCTTAAAAATTGTCTGTTCTCGGTTACaccactcactactgagttccaaactgcctctggcacacaagccgaagatcaccatgtgcaatgctaagcagctggagtggtgtaaagctcaccaccattggactggAGCTTTGGAAACGcactctctggagtgatgaatcacgcttcatcatctggcagtccgacggatgaatcttggtttggcggatgccaggaaaaccctacctgtcccaatgcatagtgccaactgtaaagtttggtggaggaggaataatggtctggggctgttatggttcgggctaggccccttagtcccagtgaagggaaatcttaacttgACTGGcatacacagagccctgacctcaaccccattgaacacctttgggatgaattggaacatcgACTGTGAggcaggcctaatcgcccatcaTCAATGCCGACCTCACAtttgttcttgtggctgaatgaaagcaagtccccgcagcaaggTTCCAACAtaaagtggaaagccttctcaggagagtggaggctgttgtagcagcaaagggcagaccaactccatattaatgccatgattttggaatgagatgtttgactagagcaggtgtccacatacttttggtcatgtagtgtctcAAGGTTTAACAAAATAGGAATTGTAGCTTTTCAATGCATTCTGCCCCACCCCCCTCCAAAAattgatttccattcaaaatcttattttccctaacctctaacctgaaccctaaccctaaccctaaccctgaacctacacctaacccctaagcttacaatagcctttgtcctcatggggatgtgggaaatgtccccaTGAGGGAAAATGTTCCTTAATtgactatccttgtgaggacttttggGGGATTTCCGGTACCCATGAGGATAGTGAATaacccccccctccatcccctccgCCCCTCACACACAATAATGCTAAGCTGCCGTGGCACATTACAAGCAGGCACGGTTAGTCACCTCATGCTAACAGCCATCTAAACCATGGAATCTCAGGTATCCTCCCAAAAGCATGTAATATAAACTCATTAAGCCAAACTGTAATATAATGAGTAATATAATGATGAAGTTCACATTCTAGTTACAGGATGATATGACTGTCCTATTTTTGGAAATTGGCATACACTGGTTGAAAGATCCTCCAACGAAGCAACTGATCAACTACATCCCCTCATTCCCTGGAGTCTATCGACAACAGTCCTCAGATGCTGTACCCATTTGTGGCTGGGATTGGCACAAACAGTCTTCCCTTTCTTCAGTATGAACCTATGGATATTAGACACATTGTgggagatatacagtatatatacatatatataatttttttcattAGACTCTCATTGACAATATTGTTTTTTAGATTTACATTCTATGAGgagaaaaaaaggaaaacaaaCAATTTCATATGTCTCTTTCAACAAGTCCTCTTGACACATGACTTGAGGACATTTTCCTACCAGTGTCACAATGATTGACTGTTATGCGTGGCTTtgtttttatctggacacttaaTTGTGCTAAAGGGCAGGCTGACAGAAGGTGAGGACATGTtgcaacacactcacacaacggCCTTGATGTTGCAGCCTCCATCTGTTTCCTGTATCCTGTAGCTTACAACATTCCTCTTGGTACTCTTCTTCAGGCCAGTAACATGCCTCAGGCAGCAGTTCTCATACGACCCTAACAACAAGCATGAGGAAGTGAAATGGTTACAATCTTCTCTATACTCTTATTGTGCTGACCCATGACATGCTGTCATGTAGGGATATTTCAGTAGCAAATGGTTTGAATTGTGCAATTGTAATAGCAACCTAGTGTAATGAGTAGTTTCTGTAATTTGAGAAAGAATTACGAGTTAAGGTATTGCAGATGTCTGCAAGAGAGACATCAAAGGGACTTCATGTTTAAGCTGCTTGAAGTTGCATATGAGCTATGTAAACTACCGTCAAAGTCAAAGTGTTGTGAAATCTGGTGCCAGGCCATTTGAGACAATGTTTTgaaaggagggggagacagacataTCCCAACACATCAGTCTAAAATTTTCCCATAAATAATTATCTACATTATTTTCTAGTGGCAAAATATTCCTCTTCTGGACAAAGTATGGACCATTGGaagcttgtaaaaaaaaaactacgTAGAACAACTTTTCTCCATTCCAGAGGCACAAGGAGGTCTCCAGGCACAACAATGCATTAAGTGTACAAATGTGGAGTATAGGCtactatgtacagtatatttattttCAACAAGAAGTAAATTACAAGAAGTACTGAGAATGAACCAAAACACATGAAAGGCTTGCTTTACACCATTACACCAATTTCAGTGAACTTCACAATAATGAATCTACAGAATATGAATACCGTTCCTTAGATTGTTTAATGGTGCCTACCTTGAGCCAGAGTGAGATACATGCATGTCAGGAGCAGGAGAAAGAACAGAGCCTGGAACCTCATGGTGTCACTGCTGCTGTGGGGTCCGCTACAAGAACAGGACAGAATGTAAAGCAAGGGAAGCTTCCTCTTTTTAATACCTCCTCCACATCATCAACGTGATGTTTGTATTGAGACCACCCTGTCTATAATACCAGTATGTTCCCATTCTAGACCCCAATACTAGACCCCCACACTGACCCCTTGATTACAAACACGTCCTTCTTGGTAACAGTCAACCAGATCCAGATGTCTTCAGCTGTTTTCTCCAGCTATCATTTGTTTGGCTGAAACTCTGACCATGTTCTAATAAATCAACAACCAATCAGATAAAGCCAAACTCCGTCTCTCGAGCCAGCTGTATAAACTTGTGTCTTTTATTAGTTAGAAATGCAAAAGTACAGAATGTTTACAGCATTAATCCGAAAGCTAGTGAAGTATGAATTCAGCATTAGGCAAGGATATAAACATGCAAAAGGTCAACATATAAACAGTCCTGACAACCTCTCAACACAAAAGCCTACACCCACCAACAATGCAGAACATGCTGCAAATAAGCTCCTAAAAACTTACATAGTCTCTCAGAAGAAATGTCCTCGTTGAGTTCCCTTGGCTGTTTTATAGCTGCTATATAATACCTTCACCTCTCTACCAACCCTGTTACCTCAATCAGCCACACCTCCTCTGGCATGACAACCACGGTATGTTTTACAATTGCTGGGAAGAGGTACAATTTGAACAAGATTCACAATTGAATGCCACTGAACAGTTTTTCT
>TU478879
TTTGTTATCATTTTTTGCTTTATTACAAATGTGAAGTTATACAAATATTGCTTTTAACACATAGTACTGATAGAAAAATATACTATacatacaaagtatgtggacaccctttcaaagtGGATTCgtctatttcaaccacacctgttgctgacaagtgtataaaatcgagcacacagccatgcaatctccatagacaaacattgtcagtaaaatggccttactggagagctcactgactttcaatgtggcaccgtcataggatgccacctttccaacaagtcagttcttcaaatatctgccctgctag
>TU478881
TTTGTTATCATTTTTTGCTTTATTACAAATGTGAAGTTATACAAATATTGCTTTTAACACATAGTACTGATAGAAAAATATACTATacatacaaagtatgtggacaccctttcaaagtGGATTCgtctatttcaaccacacctgttgctgacaagtgtataaaatggagcacacagccatgcaatctccaaagacaaacgttggcagtagaatggccttactgaagagctcagtgactttcaacgtggcatcatagaatgctacctttccaacaagtcagttcgggAAATTTCTGCCCTACTTGAGCTACCCCGGGcaactttaagtgctgttattgtgaagtggaaacatctaggagcaaaaACGGCTCAGCAGTAAAggggtaggccacacaagctcacagaatgcgAAGCACTCAGCGCTTAAAAATTGTCTGTTCTCGGTTACaccactcactactgagttccaaactgcctctggcacacaagccgaagatcaccatgtgcaatgctaagcagctggagtggtgtaaagctcaccaccattggactggAGCTTTGGAAACGcactctctggagtgatgaatcacgcttcatcatctggcagtccgacggatgaatcttggtttggcggatgccaggaaaaccctacctgtcccaatgcatagtgccaactgtaaagtttggtggaggaggaataatggtctggggctgttatggttcgggctaggccccttagtcccagtgaagggaaatcttaacttgACTGGcatacacagagccctgacctcaaccccattgaacacctttgggatgaattggaacatcgACTGTGAggcaggcctaatcgcccatcaTCAATGCCGACCTCACAtttgttcttgtggctgaatgaaagcaagtccccgcagcaaggTTCCAACAtaaagtggaaagccttctcaggagagtggaggctgttgtagcagcaaagggcagaccaactccatattaatgccatgattttggaatgagatgtttgactagagcaggtgtccacatacttttggtcatgtagtgtctcAAGGTTTAACAAAATAGGAATTGTAGCTTTTCAATGCATTCTGCCCCACCCCCCTCCAAAAattgatttccattcaaaatcttattttccctaacctctaacctgaaccctaaccctaaccctaaccctgaacctacacctaacccctaagcttacaatagcctttgtcctcatggggatgtgggaaatgtccccaTGAGGGAAAATGTTCCTTAATtgactatccttgtgaggacttttggGGGATTTCCGGTACCCATGAGGATAGTGAATaacccccccctccatcccctccgCCCCTCACACACAATAATGCTAAGCTGCCGTGGCACATTACAAGCAGGCACGGTTAGTCACCTCATGCTAACAGCCATCTAAACCATGGAATCTCAGGTATCCTCCCAAAAGCATGTAATATAAACTCATTAAGCCAAACTGTAATATAATGAGTAATATAATGATGAAGTTCACATTCTAGTTACAGGATGATATGACTGTCCTATTTTTGGAAATTGGCATACACTGGTTGAAAGATCCTCCAACGAAGCAACTGATCAACTACATCCCCTCATTCCCTGGAGTCTTATCGACAACAGTCCTCAGATGCTGTACCCATTTGTGGCTGGGATTGGCACAAACAGTCTTCCCTTTCTTCAGTATGAACCTATGGATATTAGACACATTGTgggagatatacagtatatatacatatatataatttttttcattAGACTCTCATTGACAATATTGTTTTTTAGATTTACATTCTATGAGgagaaaaaaaggaaaacaaaCAATTTCATATGTCTCTTTCAACAAGTCCTCTTGACACATGACTTGAGGACATTTTCCTACCAGTGTCACAATGATTGACTGTTATGCGTGGCTTtgtttttatctggacacttaaTTGTGCTAAAGGGCAGGCTGACAGAAGGTGAGGACATGTtgcaacacactcacacaacggCCTTGATGTTGCAGCCTCCATCTGTTTCCTGTATCCTGTAGCTTACAACATTCCTCTTGGTACTCTTCTTCAGGCCAGTAACATGCCTCAGGCAGCAGTTCTCATACGACCCGAGCCAGAGTGAGATACATGCATGTCAGGAGCAGGAGAAAGAACAGAGCCTGGAACCTCATGGTGTCACTGCTGCTGTGGGGTCCGCTACAAGAACAGGACAGAATGTAAAGCAAGGGAAGCTTCCTCTTTTTAATACCTCCTCCACATCATCAACGTGATGTTTGTATTGAGACCACCCTGTCTATAATACCAGTATGTTCCCATTCTAGACCCCAATACTAGACCCCCACACTGACCCCTTGATTACAAACACGTCCTTCTTGGTAACAGTCAACCAGATCCAGATGTCTTCAGCTGTTTTCTCCAGCTATCATTTGTTTGGCTGAAACTCTGACCATGTTCTAATAAATCAACAACCAATCAGATAAAGCCAAACTCCGTCTCTCGAGCCAGCTGTATAAACTTGTGTCTTTTATTAGTTAGAAATGCAAAAGTACAGAATGTTTACAGCATTAATCCGAAAGCTAGTGAAGTATGAATTCAGCATTAGGCAAGGATATAAACATGCAAAAGGTCAACATATAAACAGTCCTGACAACCTCTCAACACAAAAGCCTACACCCACCAACAATGCAGAACATGCTGCAAATAAGCTCCTAAAAACTTACATAGTCTCTCAGAAGAAATGTCCTCGTTGAGTTCCCTTGGCTGTTTTATAGCTGCTATATAATACCTTCACCTCTCTACCAACCCTGTTACCTCAATCAGCCACACCTCCTCTGGCATGACAACCACGGTATGTTTTACAATTGCTGGGAAGAGGTACAATTTGAACAAGATTCACAATTGAATGCCACTGAACAGTTTTTCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478878 False 3676 lncRNA 0.42 2 60509684 60513454
TU478879 False 307 lncRNA 0.37 2 60509684 60573995
TU478881 True 2957 lncRNA 0.43 3 60509684 60513454

Neighbor

gene id symbol gene type direction distance location
LOC110522875 NA coding upstream 25254 60480168 ~ 60484430 (+)
LOC110524216 LOC106613701 coding upstream 57042 60435763 ~ 60452642 (+)
LOC110524215 LOC106613700 coding upstream 77361 60427110 ~ 60432323 (+)
hsh2d LOC106613697 coding upstream 98646 60407553 ~ 60411038 (+)
LOC110524213 LOC106613698 coding upstream 102236 60398990 ~ 60407448 (+)
LOC110524224 LOC106613709 coding downstream 116478 60666192 ~ 60692763 (+)
LOC110524226 LOC106573564 coding downstream 120225 60694220 ~ 60695905 (+)
LOC110524227 fbn3 coding downstream 196761 60770756 ~ 60861371 (+)
LOC110524234 LOC106613716 coding downstream 365335 60939330 ~ 60942382 (+)
LOC118964633 polr2e coding downstream 503509 61077504 ~ 61081007 (+)
G422612 NA non-coding upstream 7365 60502052 ~ 60502319 (+)
G422570 NA non-coding upstream 65082 60444312 ~ 60444602 (+)
G422566 NA non-coding upstream 75821 60433211 ~ 60433863 (+)
G422563 NA non-coding upstream 85845 60423550 ~ 60423839 (+)
G422562 NA non-coding upstream 87084 60422156 ~ 60422600 (+)
G422654 NA non-coding downstream 17476 60591471 ~ 60591691 (+)
G422658 NA non-coding downstream 22620 60596615 ~ 60596844 (+)
G422659 NA non-coding downstream 23028 60597023 ~ 60597372 (+)
G422674 NA non-coding downstream 51495 60625490 ~ 60625880 (+)
G422675 NA non-coding downstream 51958 60625953 ~ 60626221 (+)
G420634 NA other upstream 1565467 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2092908 58411240 ~ 58418268 (+)
G419452 NA other upstream 2610036 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3142347 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3551519 56943838 ~ 56958165 (+)
G423922 NA other downstream 1147542 61721537 ~ 61722024 (+)
G424079 NA other downstream 1531528 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1709157 62283054 ~ 62327772 (+)
G425224 NA other downstream 2471095 63045090 ~ 63051530 (+)

Expression


Co-expression Network