G422654


Basic Information

Item Value
gene id G422654
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60591471 ~ 60591691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478918
GTATTGTATACTGTACTTGTACACGGTGTGCTGATTGGTTGGCCTGGGCTCAGAAGCTTCAGTAAACATGGGACACAGCCAAATCTCCTCATTTACTTCCCTCAGTTTGTAATTACATGTCAAATCACCACAGTTTGAATCAAGAAATAACATAGGGAAAGTTATAGCTTATGGCTTCACTTGGTTTCTCCCCAACGACCTGTGTATTTCATATTTTAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478918 True 221 lncRNA 0.40 1 60591471 60591691

Neighbor

gene id symbol gene type direction distance location
LOC110524221 ranbp3 coding upstream 24888 60546181 ~ 60566583 (+)
ctns LOC106613706 coding upstream 47984 60534533 ~ 60543487 (+)
LOC110522875 NA coding upstream 107041 60480168 ~ 60484430 (+)
LOC110524216 LOC106613701 coding upstream 138829 60435763 ~ 60452642 (+)
LOC110524215 LOC106613700 coding upstream 159148 60427110 ~ 60432323 (+)
LOC110524224 LOC106613709 coding downstream 98782 60666192 ~ 60692763 (+)
LOC110524226 LOC106573564 coding downstream 102529 60694220 ~ 60695905 (+)
LOC110524227 fbn3 coding downstream 179065 60770756 ~ 60861371 (+)
LOC110524234 LOC106613716 coding downstream 347639 60939330 ~ 60942382 (+)
LOC118964633 polr2e coding downstream 485813 61077504 ~ 61081007 (+)
G422618 NA non-coding upstream 17476 60509684 ~ 60573995 (+)
G422612 NA non-coding upstream 89152 60502052 ~ 60502319 (+)
G422570 NA non-coding upstream 146869 60444312 ~ 60444602 (+)
G422566 NA non-coding upstream 157608 60433211 ~ 60433863 (+)
G422563 NA non-coding upstream 167632 60423550 ~ 60423839 (+)
G422658 NA non-coding downstream 4924 60596615 ~ 60596844 (+)
G422659 NA non-coding downstream 5332 60597023 ~ 60597372 (+)
G422674 NA non-coding downstream 33799 60625490 ~ 60625880 (+)
G422675 NA non-coding downstream 34262 60625953 ~ 60626221 (+)
G422679 NA non-coding downstream 38545 60630236 ~ 60630441 (+)
G420634 NA other upstream 1647254 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2174695 58411240 ~ 58418268 (+)
G419452 NA other upstream 2691823 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3224134 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3633306 56943838 ~ 56958165 (+)
G423922 NA other downstream 1129846 61721537 ~ 61722024 (+)
G424079 NA other downstream 1513832 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1691461 62283054 ~ 62327772 (+)
G425224 NA other downstream 2453399 63045090 ~ 63051530 (+)

Expression


Co-expression Network