G422701


Basic Information

Item Value
gene id G422701
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60700043 ~ 60704580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478966
AATCAATAGTTCAATAAAAGTCATTTATTGATTGTGTTGAACTGGCCACAGAGTGAACAAACTTATTGGGTGTGTGCATTCATGATACGCAGAACAAAAAGACCAGTCATATGTTATTGACATGATGACCCTGGCATTTCTCTTGTTGCAATAGTTGAACTTTTAATAAAAGAAACATCCAATAATCATGATTAAAGTGAGCCATTGAGTGTATCAGCCCTTTTGGTGCTCTAGAAACAGACCACAGATAAAAATCCACAGACACTCAGTGTGAACGTGCCATACTGGAGACAATAGAACAGAGAGTGAGGCACACGGACCCTGGCAACAAAGAAGTGTGTTCCTACCGTGGTCCATATGTGCTTTAGTCAACTCATCTGATCCTCATTGTCATTTGCCTGATACACATCTGGCACCAGGCTAGTTAGTGTATTTCAGTGTGAGACAGATAAGAGATGGTTGTGATCGACACATCTCTGGGCGAAAGAAAATGACAGGTAATTTCAAGCCCCCCCCATCTTGCACAGTAGTATCTTTCAGTGCAAGAACGATTTGTCACATTTCAAactagacatttttttttttttttttgcaaaagtgCATGTCAGTTATATGAATAGTAAATTTGTATTGATCCAGACATTATTCCATACGTATAGATTTAGACAGAATCTTAAAACATTGTTACATTTTGAGGGTACCCATCAGCATGGTTACATTGTAATGGCTCTCCTAAAGATGTAAGatcttaaagacatgctccgctACTTTGACGACTAAAAAATAATTGTTCAAACCTcctgctttgggctggatgtgtcaatgtgtagttcacaCATGCATAATggatgagcagaattactgtcttacctcaattagccatgaAATCCCTAGTGTGAAAACAACTGTTTTCTTGAAGCTGTGCTGCGCCCCATTTGAGTAACATCTAGCAAGAGGCCTGCTCAGCGTTATCCAATGAGACTCTAGCTATAGTCTGTTCACCCTGTTACCGTCTGTCAAACGGTTAGCGGAGCATCGGCTCCCAGACCAACAGTTTCCGAGACAGCttctagccataagactgctaaatagccataagactgctaaatagccataagactgctaaatagttcatTAAGGGTTACCCGGACTATCTCCAATGACTCTATGCACACTGAGACTATGCactgagggtacaaaacattaggaacaccagctctttccatggcatagacagaccaggtgaatccaagtgaaagctattatcccttattgatgtcaactGTTAATTCctcttaaatcagtgtagatgaaggggaggagacaggttaaagaaggatgtttaagccttgaggcaattgagacatggattgtgtgtgagtgccattcagagggtgaatgggcagacaaaatatttaagtgcctttgaacggggtatggtagtaggtgtcaagcgcaccggtttgagtgtgtcaagaactgcaacgctgctgtgtttttcacgctcaacagtttcctatgtGTATTAAGAATTTGatttgttgagagagagagagaaagcgcaaTGACATGCAACATTTAAAACTTGTTGTGTATtttagttttaaaaaggcttctgaagtttgtaatttacactttgaaatttcagacttgattttcacttaagaaaaatgtatcaaccctttcaaaaatgtccattaatattataattataattatataattataatccacataatactttacatttcctgttgctgcaggattattttcctgctgtagcaaactggctcaaattaagctcCAACATCTGTACCTAGGCACTGGATGGCTGTCCAGATTCTCAATAAAAACCCTTTGAACAAGAGCAGCAAGTGAAGATTTTTCCCAATAGTTTGTAAAGATATACTAATACATAGAGCTACATAACAAGTGCTTGTGAcagaaaaagtaaaaaaaaatagcagCCAAGGCACAAAATAACAAAGTTCAGTAGCACAGAGTAAAACACCTTGTGGAGAAACATGCTGCAAGATCTTCTCTGTTGTCACATTGATTATAGAAAAACACATAATATTTTTTCCCCAAGGCTTTACTTGTAAAATGTTTTATAAGGGAGCAGGAGTAGTTAGCCCAAGATACTGATCTAAGGTCTGTTTTGTGTTTGTCACCTGCAATCCTATGGCAACTTCTACTTGGGACCCTTTCCTAACAAATAGGCATGTTCTTCTTTTCTTCGCTAGAAGGCGCTATCACCATTCCAACAAGAGTAATATGACCAATTCAATCCTGTACAATTTGGAGCACTTTTGGGAAGTTTGTATTAGCTTCCACAGACAAAATTGTCTGATTAAAAACTATCAGCTACAAAGCTATATTATCTGCACATTTCAATCTAGAGGCTGTCATACTGTTGCCTATGATATCCTTAATTTGAATAAAAAGCTAACTGTTCAATAAATACATGATTTTATCCAAAATCTATTATCTTACATGTGTTATTAGTGCCACAGTGGTGGATATAACGAATAAGAATTCCATAGATTAATCTGGGTTTTGTAAAAATCCAGATTGCGCCATTTTTCATTAAAAAGAAAATCCAGGGAGAAATTATCCAGGGAAGAATTTACACACTTGTTACAGTCAccacgctctggataacatgaaaacagcctaaccagctctgctagggcgagtaaaatggtcagagtgaagtgttttctcatttgtgtctggaagtagctagcaagctagccaacgttagtcagttagcttgggtgcttgactgccgttgaggTCAGAAcactcagatcaaccctactcctcggccagagcatccagtgtgcgctctgaacactccgagagcgaaacgctctgaatttacgaactgacaatctgacaacgctctgaatttacgaactgacaatctcacaacgctctgaatttacgaaatgacaatctgacaacgctctgaatttacgaactgacaatctgacaacgctctgaatttacgtaCGACCCAGAAGCACTCTGACACACTGGAGGCAATTTAAGAATGCACCCTTTGACTGTACCAGAGTTAATccccattgcactgcacactgctctatcccacctggacaagagaaatacctatgtaagaatgctgttaatcgactacagctcagccttcaacaatATATTGCCCTACAAGATCAacactaagctcagggccctgggtctgaacccatcccacaacagtggtgggcctgataaccaacaatgatgagacagcctacagggtggaggtgagggccctggcggagtggtggcaggaaaataacctctccctcaacgtcaacaaaactaaggagctgatcgtggactacaggagacagcagagagggcacggccccatccacatcgacggggcgcagtggagagggtcaaaagcttcaaatTCCTCGGCATGCAGTTCACTGACAgcctgaaatggtcccttcacacaaACAGCTTCGTGGAGAAGGAgcaatagcgcctcttcaacttcaggtgGTTGAAGAGATTTGTCTTGGCCCCAAAAGAACCtcgcaaacttctacagatgcaccattgaaagcatcctgggctcccgagtggcgcagtggtccaaggcactgcatcgcagtgctagaggtgtcactacagaacctggttctattccaggctgtatcacaaccggacgtgattgtgAATCCCataaggcggcacacaattggcccagcatcgtccgggttacggtttggccggggtaaaccatcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaataaatgaacaaaatcTAAATCCTGTCAGggtgtatcactgcctggtacggcaattacaCCTTCTGCAAcctcagggctctccagagggtggtgcggttaGCCAGGAGCACCACCGggagcacactgcctgccctccaggacatatACAGCACCTGGTGTCACAAGAAGGcctaaaagatcatcaaggacctgaGCCACTGACTGTTCATCCAGCTACAATCTATAAGGTGatgacagtacaggtgcatcaaagctgggaccgagagactgagaaacagcttctatctccaggccatcagactgttaaaaagtcaccactagccggcctccgcccagtaccctgtcctgaacCTTAATCACTGTTGCAGCCGGCTACCActcggtactctaccctgcaccttaagAAACTTCTGCCCTATGTACAGAGTCATTGAacgctggtcactttaataatgtttacacactgTTTCACCCACTTTATATACAGTATTCTACGCATGGCTCAtaaatataactactgctgtacacacctttctattcatatacctactcattcaagggttttcgttattttctactattttctacattgtagaataatagtgaagacgtcaaaactatgaaataacacaaatggaaccatgta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478966 True 4479 lncRNA 0.42 2 60700043 60704580

Neighbor

gene id symbol gene type direction distance location
LOC110524226 LOC106573564 coding upstream 4139 60694220 ~ 60695905 (+)
LOC110524224 LOC106613709 coding upstream 7280 60666192 ~ 60692763 (+)
LOC110524221 ranbp3 coding upstream 133460 60546181 ~ 60566583 (+)
ctns LOC106613706 coding upstream 156556 60534533 ~ 60543487 (+)
LOC110522875 NA coding upstream 215613 60480168 ~ 60484430 (+)
LOC110524227 fbn3 coding downstream 66176 60770756 ~ 60861371 (+)
LOC110524234 LOC106613716 coding downstream 234750 60939330 ~ 60942382 (+)
LOC118964633 polr2e coding downstream 372924 61077504 ~ 61081007 (+)
tm6sf2 tm6s1 coding downstream 543992 61248572 ~ 61265206 (+)
hapln4 hapln4 coding downstream 562635 61267215 ~ 61285666 (+)
G422720 NA non-coding upstream 5936 60693858 ~ 60694107 (+)
G422717 LOC106613708 non-coding upstream 17298 60678666 ~ 60682745 (+)
G422705 NA non-coding upstream 37355 60662361 ~ 60662688 (+)
G422679 NA non-coding upstream 69602 60630236 ~ 60630441 (+)
G422811 NA non-coding downstream 183004 60887584 ~ 60889990 (+)
G422814 NA non-coding downstream 185598 60890178 ~ 60890448 (+)
G422838 NA non-coding downstream 219683 60924263 ~ 60926985 (+)
G422841 NA non-coding downstream 226392 60930972 ~ 60931277 (+)
G420634 NA other upstream 1755826 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2283267 58411240 ~ 58418268 (+)
G419452 NA other upstream 2800395 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3332706 57352343 ~ 57367627 (+)
G423922 NA other downstream 1016957 61721537 ~ 61722024 (+)
G424079 NA other downstream 1400943 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1578572 62283054 ~ 62327772 (+)
G425224 NA other downstream 2340510 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 2971834 63676409 ~ 63684848 (+)

Expression


Co-expression Network