G423251


Basic Information

Item Value
gene id G423251
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60700049 ~ 60704571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU479569
ccatttgtgttatttcatagttttgacgtcttcactattattctacaatgtagaaaatagtagaaaataacgaaaacccttgaatgagtaggtatatgaatagaaaggtgtgtacagcagtagttatatttaTGAGCCATGCGTAGAATACTGTATATAAAGTGGGTGAAAcagtgtgtaaacattattaaagtgaccagcgtTCAATGACTCTGTACATAGGGCAGAAGTTTcttaaggtgcagggtagagtaccgagTGGTAGCCGGCTGCAACAGTGATTAAGgttcaggacagggtactgggcggaggccggctagtggtgactttttaacagtctgatggcctggagatagaagctgtttctcagtctctcggtcccagctttgatgcacctgtactgtcatCACCTTATAGATTGTAGCTGGATGAACAGTCAGTGGCtcaggtccttgatgatcttttaggCCTTCTTGTGACACCAGGTGCTGTatatgtcctggagggcaggcagtgtgctccCGGTGGTGCTCCTGGCtaaccgcaccaccctctggagagccctgaggTTGCAGAAGGtgtaattgccgtaccaggcagtgatacaccCTGACAGGATTTAgattttgttcatttatttaacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatggtttaccccggccaaaccgtaacccggacgatgctgggccaattgtgtgccgccttatGGGATTcacaatcacgtccggttgtgatacagcctggaatagaaccaggttctgtagtgacacctctagcactgcgatgcagtgccttggaccactgcgccactcgggagcccaggatgctttcaatggtgcatctgtagaagtttgcgaGGTTCTTTTGGGGCCAAGACAAATCTCTTCAACcacctgaagttgaagaggcgctattgcTCCTTCTCCACGAAGCTGTttgtgtgaagggaccatttcaggcTGTCAGTGAACTGCATGCCGAGGAatttgaagcttttgaccctctccactgcgccccgtcgatgtggatggggccgtgccctctctgctgtctcctgtagtccacgatcagctccttagttttgttgacgttgagggagaggttattttcctgccaccactccgccagggccctcacctccaccctgtaggctgtctcatcattgttggttatcaggcccaccactgttgtgggatgggttcagacccagggccctgagcttagtgtTGATCTTGTAGGGCAATATattgttgaaggctgagctgtagtcgattaacagcattcttacataggtatttctcttgtccaggtgggatagagcagtgtgcagtgcaatggggATTAACTCTGGTACAGTCAAAGGGTGCATTCTTAAATTGCCTCCAGTGTGTCAGAGTGCTTCTGGGTCGtacgtaaattcagagcgttgtcagattgtcagttcgtaaattcagagcgttgtcagattgtcatttcgtaaattcagagcgttgtgagattgtcagttcgtaaattcagagcgttgtcagattgtcagttcgtaaattcagagcgtttcgctctcggagtgttcagagcgcacactggatgctctggccgaggagtagggttgatctgagtgTTCTGAcctcaacggcagtcaagcacccaagctaactgactaacgttggctagcttgctagctacttccagacacaaatgagaaaacacttcactctgaccattttactcgccctagcagagctggttaggctgttttcatgttatccagagcgtggTGACTGTAACAAGTGTGTAAATTCTTCCCTGGATAATTTCTCCCTGGATTTTCTTTTTAATGAAAAATGGCGCAATCTGGATTTTTACAAAACCCAGATTAATCTATGGAATTCTTATTCGTTATATCCACCACTGTGGCACTAATAACACATGTAAGATAATAGATTTTGGATAAAATCATGTATTTATTGAACAGTTAGCTTTTTATTCAAATTAAGGATATCATAGGCAACAGTATGACAGCCTCTAGATTGAAATGTGCAGATAATATAGCTTTGTAGCTGATAGTTTTTAATCAGACAATTTTGTCTGTGGAAGCTAATACAAACTTCCCAAAAGTGCTCCAAATTGTACAGGATTGAATTGGTCATATTACTCTTGTTGGAATGGTGATAGCGCCTTCTAGCGAAGAAAAGAAGAACATGCCTATTTGTTAGGAAAGGGTCCCAAGTAGAAGTTGCCATAGGATTGCAGGTGACAAACACAAAACAGACCTTAGATCAGTATCTTGGGCTAACTACTCCTGCTCCCTTATAAAACATTTTACAAGTAAAGCCTTGGGGAAAAAATATTATGTGTTTTTCTATAATCAATGTGACAACAGAGAAGATCTTGCAGCATGTTTCTCCACAAGGTGTTTTACTCTGTGCTACTGAACTTTGTTATTTTGTGCCTTGGctgctatttttttttactttttctgTCACAAGCACTTGTTATGTAGCTCTATGTATTAGTATATCTTTACAAACTATTGGGAAAAATCTTCACTTGCTGCTCTTGTTCAAAGGGTTTTTATTGAGAATCTGGACAGCCATCCAGTGCCTAGGTACAGATGTTGgagcttaatttgagccagtttgctacagcaggaaaataatcctgcagcaacaggaaatgtaaagtattatgtggattataattatataattataattataatattaatggacatttttgaaagggttgatacatttttcttaagtgaaaatcaagtctgaaatttcaaagtgtaaattacaaacttcagaagcctttttaaaactaaaATACACAACAAGTTTTAAATGTTGCATGTCAttgcgctttctctctctctctcaacaaatCAAATTCTTAATACacataggaaactgttgagcgtgaaaaacacagcagcgttgcagttcttgacacactcaaaccggtgcgcttgacacctactaccataccccgttcaaaggcacttaaatattttgtctgcccattcaccctctgaatggcactcacacacaatccatgtctcaattgcctcaaggcttaaacatccttctttaacctgtctcctccccttcatctacactgatttaagagGAATTAACagttgacatcaataagggataatagctttcacttggattcacctggtctgtctatgccatggaaagagctggtgttcctaatgttttgtaccctcagtGCATAGTCTCAGTGTGCATAGAGTCATTGGAGATAGTCCGGGTAACCCTTAatgaactatttagcagtcttatggctatttagcagtcttatggctatttagcagtcttatggctagaaGCTGTCTCGGAAACTGTTGGTCTGGGAGCCGATGCTCCGCTAACCGTTTGACAGACGGTAACAGGGTGAACAGACTATAGCTAGAGTCTCATTGGATAACGCTGAGCAGGCCTCTTGCTAGATGTTACTCAAATGGGGCGCAGCACAGCTTCAAGAAAACAGTTGTTTTCACACTAGGGATTtcatggctaattgaggtaagacagtaattctgctcatccATTATGCATGtgtgaactacacattgacacatccagcccaaagcaggAGGTTTGAACAATTATTTTTTAGTCGTCAAAGTagcggagcatgtctttaagatCTTACATCTTTAGGAGAGCCATTACAATGTAACCATGCTGATGGGTACCCTCAAAATGTAACAATGTTTTAAGATTCTGTCTAAATCTATACGTATGGAATAATGTCTGGATCAATACAAATTTACTATTCATATAACTGACATGcacttttgcaaaaaaaaaaaaaaaaatgtctagtTTGAAATGTGACAAATCGTTCTTGCACTGAAAGATACTACTGTGCAAGATGGGGGGGGCTTGAAATTACCTGTCATTTTCTTTCGCCCAGAGATGTGTCGATCACAACCATCTCTTATCTGTCTCACACTGAAATACACTAACTAGCCTGGTGCCAGATGTGTATCAGGCAAATGACAATGAGGATCAGATGAGTTGACTAAAGCACATATGGACCACGGTAGGAACACACTTCTTTGTTGCCAGGGTCCGTGTGCCTCACTCTCTGTTCTATTGTCTCCAGTATGGCACGTTCACACTGAGTGTCTGTGGATTTTTATCTGTGGTCTGTTTCTAGAGCACCAAAAGGGCTGATACACTCAATGGCTCACTTTAATCATGATTATTGGATGTTTCTTTTATTAAAAGTTCAACTATTGCAACAAGAGAAATGCCAGGGTCATCATGTCAATAACATATGACTGGTCTTTTTGTTCTGCGTATCATGAATGCACACACCCAATAAGTTTGTTCACTCTGTGGCCAGTTCAACACAATCAATAAATGACTTTTATTGAACTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU479569 True 4464 lncRNA 0.42 2 60700049 60704571

Neighbor

gene id symbol gene type direction distance location
ndufa11 LOC106613708 coding downstream 17166 60678698 ~ 60682883 (-)
LOC110524222 LOC106613707 coding downstream 73574 60605208 ~ 60626475 (-)
LOC110524219 LOC106613704 coding downstream 186569 60509679 ~ 60513480 (-)
LOC110524218 LOC106613703 coding downstream 223601 60471312 ~ 60476448 (-)
ccl44 LOC106613702 coding downstream 237855 60459847 ~ 60462194 (-)
LOC110524228 LOC106573568 coding upstream 156876 60861447 ~ 60884008 (-)
timm44 LOC106613715 coding upstream 197827 60902398 ~ 60914281 (-)
LOC110524230 hnrpm coding upstream 210446 60915017 ~ 60930663 (-)
LOC110524231 LOC106613717 coding upstream 239436 60944007 ~ 60951642 (-)
LOC110524236 rb11b coding upstream 248334 60952905 ~ 60966146 (-)
cers4a LOC106613711 non-coding downstream 1826 60695903 ~ 60728972 (-)
G423246 NA non-coding downstream 47987 60651372 ~ 60652062 (-)
G423230 NA non-coding downstream 72454 60627389 ~ 60627595 (-)
G423205 NA non-coding downstream 103767 60596015 ~ 60596282 (-)
G423202 NA non-coding downstream 105852 60593903 ~ 60594197 (-)
G423291 NA non-coding upstream 39701 60744272 ~ 60744501 (-)
G423326 NA non-coding upstream 105066 60809637 ~ 60809875 (-)
G423328 NA non-coding upstream 107626 60812197 ~ 60812455 (-)
G423357 NA non-coding upstream 136059 60840630 ~ 60841048 (-)
G423363 NA non-coding upstream 142339 60846910 ~ 60847364 (-)
G422347 NA other downstream 598993 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1561792 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1663750 59026103 ~ 59036299 (-)
G420421 NA other downstream 2285906 58413128 ~ 58414143 (-)
G420193 NA other downstream 2585989 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 354423 61058949 ~ 61081864 (-)
G424474 NA other upstream 912299 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 945396 61649967 ~ 61651775 (-)
G424502 NA other upstream 954462 61659033 ~ 61659585 (-)
G424649 NA other upstream 1183627 61888198 ~ 61927422 (-)

Expression


Co-expression Network