XLOC_023461



Basic Information


Item Value
gene id XLOC_023461
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24095316 ~ 24098879 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00047192
GTTGAAGTTTTATGAGATCttcaaaagGACAGGAAGCGGGCTTGAAGGTCTCACACTGCAAACACTGGCCGCTGAGGAAGTCACTGTATGATGAACACGGGTATCCCGTAAGACTGCAGGTGCGATTCAGAGAGCACAGCACATCTACAAACTGGGCATCGGTTGGATCGAGACGTTCCTCAGGCGAAACACTGGCAAACATTGGCCCTGCTGGATCCAGACCTACAGTAGACAAGTAAAGCTTAATTTAGTAAGCATGATTAACtaactgagg
>TCONS_00047193
ACAACGTTGAAGTTTTATGAGATCttcaaaagGACAGGAAGCGGGCTTGAAGGTCTCACACTGCAAACACTGGCCGCTGAGGAAGTCACTGTATGATGAACACGGGTATCCCGTAAGACTGCAGCACATCTACAAACTGGGCATCGGTTGGATCGAGACGTTCCTCAGGCGAAACACTGGCAAACATTGGCCCTGCTGGATCCAGACCTACAGTAGACAAGTAAAGCTTAATTTAGTAAGCATGATTAACtaactgagg

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00047192 False 274 lncRNA 0.48 3 24095316 24098874
TCONS_00047193 True 259 lncRNA 0.47 3 24095316 24098879

Neighbor


gene id symbol gene type direction distance location
XLOC_023460 lyz coding downstream 34684 24035863 ~ 24060632 (-)
XLOC_023459 zmp:0000000991 coding downstream 96419 23988970 ~ 23998897 (-)
XLOC_023458 ndufb4 coding downstream 118031 23971056 ~ 23977285 (-)
XLOC_023457 arxa coding downstream 152594 23936829 ~ 23942722 (-)
XLOC_023456 rrs1 coding downstream 255669 23837519 ~ 23839647 (-)
XLOC_023462 zgc:112982 coding upstream 2932 24101811 ~ 24163201 (-)
XLOC_023463 eif1axb coding upstream 65348 24164227 ~ 24168533 (-)
XLOC_023464 rps6ka3b coding upstream 84873 24183752 ~ 24271629 (-)
XLOC_023465 pdha1b coding upstream 174492 24273371 ~ 24282427 (-)
XLOC_023466 NA coding upstream 317445 24416324 ~ 24503022 (-)
XLOC_023665 dre-mir-735 misc upstream 14079082 38177961 ~ 38178027 (-)
XLOC_023451 NA non-coding downstream 452411 23383112 ~ 23642905 (-)
XLOC_023450 CT573302.1 non-coding downstream 821957 23273242 ~ 23273359 (-)
XLOC_023448 NA non-coding downstream 877286 22878941 ~ 23218030 (-)
XLOC_023446 CT573489.1 non-coding downstream 1723216 22371986 ~ 22372100 (-)
XLOC_023445 AL590147.1 non-coding downstream 1786258 22308944 ~ 22309058 (-)
XLOC_023467 NA non-coding upstream 393324 24492203 ~ 24492517 (-)
XLOC_023468 NA non-coding upstream 454914 24553793 ~ 24695757 (-)
XLOC_023471 NA non-coding upstream 701897 24800776 ~ 24829401 (-)
XLOC_023487 NA non-coding upstream 1651757 25750636 ~ 25754146 (-)

Expression



Co-expression Network