G422845 (LOC106613717)


Basic Information

Item Value
gene id G422845
gene name LOC106613717
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60948303 ~ 60949300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU479117
AGAGTCCAGAGGACGTAAATGGTGAAGAGGGCGATGGTGAGGGCGATGAGGCCCACGGCCTCCAGTCTGCTGTTGAAGTGCAGGTGGTCCTGAGCTCCCCTCAGACACAGCCAGCCAGAGATGGCTGCCAGGGGCGTGATGAACAGGAAGCACAGCATGTCACAGAACAACGTGCGCTTCTCGTTCCGAGGGCCCGGGTCCCGCATCCACTGTGAAgaCTCTGTGAGGGACCTGGGCTTCCGTTCAATTGTGAACTCTGTGTGGCACAGCTCACAGTAACTGGTGTTGGAGGAGGAGAGCCACTTCTCCAGGCAGCTCTTGTGCACTGTGCCCAGAGTCCCTGTGCAGTCGCAGGGGGACAGGAGGCCCTCGCTGTTGGCCCCCTCATGGCAGATCCGGCAGATTGGCCCATCGCTGGAGGAAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU479117 True 424 lncRNA 0.60 2 60948303 60949300

Neighbor

gene id symbol gene type direction distance location
LOC110524234 LOC106613716 coding upstream 5921 60939330 ~ 60942382 (+)
LOC110524227 fbn3 coding upstream 86932 60770756 ~ 60861371 (+)
LOC110524226 LOC106573564 coding upstream 252399 60694220 ~ 60695905 (+)
LOC110524224 LOC106613709 coding upstream 255540 60666192 ~ 60692763 (+)
LOC110524221 ranbp3 coding upstream 381720 60546181 ~ 60566583 (+)
LOC118964633 polr2e coding downstream 128204 61077504 ~ 61081007 (+)
tm6sf2 tm6s1 coding downstream 299272 61248572 ~ 61265206 (+)
hapln4 hapln4 coding downstream 317915 61267215 ~ 61285666 (+)
nr2c2ap nr2c2ap coding downstream 641303 61590603 ~ 61599332 (+)
LOC110524248 LOC106613729 coding downstream 687804 61637104 ~ 61655195 (+)
G422843 NA non-coding upstream 9798 60938291 ~ 60938505 (+)
G422841 NA non-coding upstream 17026 60930972 ~ 60931277 (+)
G422838 NA non-coding upstream 21318 60924263 ~ 60926985 (+)
G422814 NA non-coding upstream 57855 60890178 ~ 60890448 (+)
G422811 NA non-coding upstream 58313 60887584 ~ 60889990 (+)
G422856 NA non-coding downstream 20094 60969394 ~ 60969655 (+)
G422860 NA non-coding downstream 22337 60971637 ~ 60971903 (+)
G422861 NA non-coding downstream 22657 60971957 ~ 60972184 (+)
G422858 NA non-coding downstream 28712 60978012 ~ 60988260 (+)
G422886 NA non-coding downstream 63849 61013149 ~ 61014946 (+)
G420634 NA other upstream 2004086 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2531527 58411240 ~ 58418268 (+)
G419452 NA other upstream 3048655 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3580966 57352343 ~ 57367627 (+)
G423922 NA other downstream 772237 61721537 ~ 61722024 (+)
G424079 NA other downstream 1156223 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1333852 62283054 ~ 62327772 (+)
G425224 NA other downstream 2095790 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 2727114 63676409 ~ 63684848 (+)

Expression


Co-expression Network