G423534 (hapln4)


Basic Information

Item Value
gene id G423534
gene name hapln4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61283563 ~ 61285664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU479877
TCATTTCGTTTTGTTTATTAGGATATCACAGTAGAGATGATGAAAATGCAAAGACAGAATATCACAGAATCAGAATTTCTTAACAACAACGTCAAGATCTCATTTGTTACTTTTGTATCACAGCGTCAGCATATAGCCCTAACTATAGATACATTCATGCATCAAGATAATGATCAATACAGTTAAAATCGGGCTATTTCACAATTGAACAAAGAGTGTAATCGATAATTATGGCTGCATAGAAATATGAGATATTAAAGCAGCTATTAAAGCAGCTATTAAAGCAGCTATAACATAGTTATGTTAGTTCAGCTTCAGCCCCAGATACAGGTATAACATGCTTGCTATAGACTAACCATTTCGTCATAAAATATATCTAAGTGCAATATTCGCTACTATGTTTATTGAGCTCTGGTATGGCATGCCAGTACTTAGTTAGTTACTGAGGTAAATAATGTTTAATAATTGGCTCTACTCAAACATGGCAACTGCTCACTCGGCACAAACACCATTTCAATgtgtagttttgatttacatttggttgagttggcAACTAACGTGAAATAAACACAAAATCACACGTCATTGGATTTATGTTCAAaattgggtgaaaaaaatacagAATTCCCTTACGTTGAGGACGTTTCCAAATCTAACCAGTtttcacgttgattcaacgtcattgCATTACATattgttgttgaaatgacatggaaacataaTTGATtaaaccagtttgtgcccagagGCAGGCGACTGGGGGCGCAGTAAACTCAAAGGGCACCTCTGAGCAGTGTCCTGCCAGGACAGGCAAAGCTTGGGCATCATGCTGGCAACTGGCAACATTCACAGAtggactggccacccttcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaatgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttctgtacagcactgatgtacgaagggctatataaatacatttgatttgatttgattgatcagGCGTTAGTAGTCTGCTTTAAAGCTCATCATAATTCTCTGCTAATCAGGCCTCTGAGAGAGAGGATCTCTTAATGTGCTACATTCATTACACTCAGACAGACATAGTAAattatctctgtctttctgtctctgtctgtactgCACACTAATTAATATGACTCTCTCCGGCTGGCACTGCTTGAAGTCGAGTGCCTCTCGCAAAGGGCCTTTTTCTCTGCAAATGAAGCCACATTGAGACCAGAACACACTGTGGAGTCTGAGACCCCATCATGCTTGTGGCCTCTCTCCATGCCTCCAATAGACACATAGTCAACTATGGAGTTGTTTAATGAAAGGCTTTCCAATCTTGATGTGCCTGAGAAATTATGATCAGCTGCAGTTACTAGCTAAGCCTCTCTGAGACAGTGAAAGGCGCACGGAACGCTCTCAACAAACTTTCACCTCGTTTAACACCAGACAGGAGAAATCCTAGAGATAAAGATTCCGCACCTTATTGAACAAAGCAGTTGCTTTCCCTCGCTGGTGAATCCTGCAAATTAGCATGTGTTGTCAGTGATGTTTATCCATGTTGTTAAGTTAAAGCAATGGATGGAGCTATGTTGTACAGGCAGTGATCTTAAccctcctctcagtctctctctctctagatggtTCTGGTGGAGGTGGTGTTCATGGGGATGTCCTTGCTGCTCTTCCTTGGGCCCTGGGTCGACTTCACCACATCCCCATTAACACTCTCTTCATTCTTGCGGAAGCAGTAGACCCCGTAGAGGCGGAACTTCAGGTCAGGGAAGCCCAGGTGGCGGACTCCCGGTTGGGGCCCGCCGCAGCGGGTACGTGGGTTGACGATGGGGTAACGGATGCTTGCGTCCTCCAGCCAGCCAGCTTCACAGCGGTCCAGCAGCTGGATCTTCCAGGCAGCGTAGAGCTGGCCCGTCTTGGCCACCACGGAGCCATCACGAACGCACGCCTTCACTGCTTCAGAATAATTCACCTTCTTAAAGCGCTTCAGGAAAT

Function

symbol description
hapln4 Predicted to enable hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human HAPLN4 (hyaluronan and proteoglycan link protein 4).

NR:

description
hyaluronan and proteoglycan link protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU479877 True 2078 lncRNA 0.44 2 61283563 61285664

Neighbor

gene id symbol gene type direction distance location
trnaa-agc-3 NA coding downstream 16794 61266697 ~ 61266769 (-)
LOC110524243 LOC106613723 coding downstream 41557 61139319 ~ 61242006 (-)
tjp3 LOC106613722 coding downstream 151682 61104757 ~ 61131881 (-)
arhgap45b LOC106613721 coding downstream 187177 61082638 ~ 61096386 (-)
LOC110524239 LOC106573579 coding downstream 201699 61058949 ~ 61081864 (-)
LOC110522983 LOC106613725 coding upstream 18449 61304113 ~ 61511078 (-)
LOC110524247 LOC106613727 coding upstream 332323 61617987 ~ 61622355 (-)
LOC110524249 LOC106613730 coding upstream 374485 61660149 ~ 61679106 (-)
LOC110524252 LOC106613733 coding upstream 477454 61763118 ~ 61786542 (-)
tssk6 LOC106613736 coding upstream 555897 61841561 ~ 61842727 (-)
G423510 NA non-coding downstream 17515 61265810 ~ 61266048 (-)
G423509 tm6s1 non-coding downstream 18223 61263891 ~ 61265340 (-)
G423497 NA non-coding downstream 34676 61248568 ~ 61248887 (-)
G423495 NA non-coding downstream 36772 61246558 ~ 61246791 (-)
G423435 NA non-coding downstream 190075 61031271 ~ 61093488 (-)
G423767 NA non-coding upstream 210331 61495995 ~ 61496241 (-)
G423794 NA non-coding upstream 242867 61528531 ~ 61528739 (-)
G424412 NA non-coding upstream 247166 61532830 ~ 61595934 (-)
G424462 NA non-coding upstream 315090 61600754 ~ 61601112 (-)
G424463 NA non-coding upstream 315608 61601272 ~ 61601693 (-)
G422347 NA other downstream 1182507 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 2145306 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 2247264 59026103 ~ 59036299 (-)
G420421 NA other downstream 2869420 58413128 ~ 58414143 (-)
G424474 NA other upstream 331206 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 364303 61649967 ~ 61651775 (-)
G424502 NA other upstream 373369 61659033 ~ 61659585 (-)
G424649 NA other upstream 602534 61888198 ~ 61927422 (-)
G424678 NA other upstream 712862 61998526 ~ 62001309 (-)

Expression


Co-expression Network