G423548


Basic Information

Item Value
gene id G423548
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61299640 ~ 61345067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU479899
CCAATCAACCTTTTTTAATGATCATTTGTCTCGTAAAGAATATCTTACAATGTGACAGGACTGGAATTCATAAGAACATCAATAAATACGGATTAATACTTGAGGACCAGATTCACTCAGCCCGTCACGTCATCGTCATCGTCACACAGCGTATCTGTGCTTGTGCCGTAGGTCCCTGTAGCGCGGCTGCGTCCCGGGGGGAGGCGGTGTGCTGTGAGAACTGTAATGTGACACTTCAGGCTTCCCAAATGAACGTCTCCTTTTGATGATGCGTCAGCGGCGGCCGTGTCTCTCCCGTCGGTCTGGTGAACGGGAGCATTGGGAGCTGAGACTGTATGAATAAGGTCCATGGAGTCCAAGCAACAAACACGCCAAGAGTTGAAAGGATTTTGGAGAAAAAGTCCCACAGAGTATTTACATCACagagaggtagaagaggaggagtggagaggggtgCTTTGTGGTCTCGGCTACTACGCGTCTGGACCCcttgttttccattctctccgcTTGTAGCTTCCTTCCTATAAGAGTGCTGGTTCCTTGACAGTGACAAAATGTTAACTCAGTTTACAGTATGCAGCgctctacagtactgtactgtactgtatgtaaccataTACAAAAAGGGGAAATGAGCTCTTAACAGCTAATGCTTCAAAATCATTTTAACACTCCAGATAAAACTAATTCTGGGCTATCAAGGGGATTGCACATCAATTAGGACAGATTATAAACTAACATGTCAACGTGGTTCCCATATCTATGCACGAAGAATACCTAGTGTTGGTAGATATGGGTAACATTTTCTATGCTATGGGAATATCATGTTAAACAAAAGGAATTGATCTTGGGGTCaaaacaaccacacaaacacacacaatgtcaAAAGGGCGTTCTAGGGTTAAAACACACGGGGAGAGAGAACAGCCCAAATGAAAATGAACCATGAAAGGAAAGAGTTCAAAAAGCCAGCTTACAAAGACACTGATGAGGATAGCTAACAATAAGCAAATATGCAGTAAGCCCATCAAGTCATGCTGCCAGTCTCACAGACAACCTAACTAGTACCTCAGACAGACTAACCATGAAATCAACGAGGCGTCTCAGTGACAGCAGATGCAATAGTCATTCCCCAGTCTGATCAGTTTGTCATTGTCAGAAGGTTAACATCTGATATGGGTAGTATACAGTTGTACGTAGAATACATTCTCTCATAAAAACAACCACATTATCATATGTACTATAGCTGGTCTGGCTTTATAGAGTAAATATCATTACCCTTGACTTGAGACCTCTCCCAGGGTTAATATCATAACAGGTGACACATTACCCTCTAGCAGTCAGAAAGCAGGTTTCCTCACCACAGGACCGCGGCTATGCTGAGAATCCCATTGGTTGATGGCCTTGAGCCAGTCCTGACACAGTGGTGTTTCTGATGCCTCTGCTGCTACAGAGCTGTCATCTCATTCACCAGCACACTGCGGTAGAAAGCAGCTTGTAATGAGATGACAGTGACCTACAGTAGAGAGCCGTGTTGCTGTTTAGTGTCGGGATTACCTGTCCTCACTGGGCTACTGGCGACCAGCAccgagaggaggggagaggagagagaggacaggaggcatgaaatgaggacaggagaggaggggagaggagaggagatgagtggtGGTTCCTTGCTGTTCCGCTGACACTGGCTCGTTTTCTGTTTAGCTGTTCTAAGAACAATCTCCCCTCATCCACCTATGCTCATCTCATATTTGTTTGCTATGCATGCTTTCCTAATACTAGTAATActagtaatacacacacacacacacaccctctgtttATACTAAAGCAGTGTATGTAGTCATTGATGGATGCTTGCTGCTAACACAGGGCTCAGATGAACTGGAGGTACTcactccctgctcctctctgctcctgccACACTCCTGTCCTCCTTCTCACACTCCTACAACAGTGTAAATACAAAAGGGCAAAGTTCCGCATCATTACAGCTTGTGCTTCAGAAAACtaacagtttccttcctctccggctgCTCGTCTGTTGCTACCCGAGACAGACGACAGAAAGTGAACTTCTCCATTGCTCTAACCCTCTGATCCAATCACATGCTACCTGACTGCGCATCCACTCATCCACACACTCACAGTTTGCCGACCATGCAGAGATATAGATACTGCTCTGACGTAGTTCTAAGAAGATCTCTCTCTATATGAGTATGcatctgtgtgtttctgtagacctccctccctccctccctccctccctccccctcccaacAGGGAACCAAGAGCCTGTGTGATGAGAATGGCTCCGTAGCAATTAAGGTGAAGTGCTGGCTATAGCCTAAAGAAGAAGCCCAGATGGTTGTGAAGCCATTCCTCCTGCAGGCGTGCCGACCATGCCATGCAGCAGACAGCTGTGGGCGACCTCTGTTGTTTAGTGACTCGTCTTCATAATTAAGGCTCATCGCAATGAAGTAGCGATCCCATCGTCCCAGCCGTCTGCCTGCCTTCAGGGCATCAGACGGCAgagtgggtgagagggagagtgggtgagagggagagtggtagagagggagagtggtagagagggagagtgggtgagagggagagtgggtgagagggagagtgggtgagagggagagtgggtgagaaggagagtgggtgagagggagagtggaagagagggagagagggagagagagagagcgagagggagagaagccaCACAAACTGGGCCGGTGTTCCATTGACAAATGTACAGTCTCAGCCCAGATGAGATGGGTGTGAAatcgccagagagagagagaggagagagagcagacttGGCAAGTCCATGAGGG
>TU479895
AATATCTTACAATGTGACAGGACTGGAATTCATAAGAACATCAATAAATACGGATTAATACTTGAGGACCAGATTCACTCAGCCCGTCACGTCATCGTCATCGTCACACAGCGTATCTGTGCTTGTGCCGTAGGTCCCTGTAGCGCGGCTGCGTCCCGGGGGGAGGCGGTGTGCTGTGAGAACTGTAATGTGACACTTCAGGCTTCCCAAATGAACGTCTCCTTTTGATGATGCGTCAGCGGCGGCCGTGTCTCTCCCGTCGGTCTGGTGAACGGGAGCATTGGGAGCTGAGACTGTATGAATAAGGTCCATGGAGTCCAAGCAACAAACACGCCAAGAGTTGAAAGGATTTTGGAGAAAAAGTCCCACAGAGTATTTACATCACagagaggtagaagaggaggagtggagaggggtgCTTTGTGGTCTCGGCTACTACGCGTCTGGACCCcttgttttccattctctccgcTTGTAGCTTCCTTCCTATAAGAGTGCTGGTTCCTTGACAGTGACAAAATGTTAACTCAGTTTACAGTATGCAGCgctctacagtactgtactgtactgtatgtaaccataTACAAAAAGGGGAAATGAGCTCTTAACAGCTAATGCTTCAAAATCATTTTAACACTCCAGATAAAACTAATTCTGGGCTATCAAGGGGATTGCACATCAATTAGGACAGATTATAAACTAACATGTCAACGTGGTTCCCATATCTATGCACGAAGAATACCTAGTGTTGGTAGATATGGGTAACATTTTCTATGCTATGGGAATATCATGTTAAACAAAAGGAATTGATCTTGGGGTCaaaacaaccacacaaacacacacaatgtcaAAAGGGCGTTCTAGGGTTAAAACACACGGGGAGAGAGAACAGCCCAAATGAAAATGAACCATGAAAGGAAAGAGTTCAAAAAGCCAGCTTACAAAGACACTGATGAGGATAGCTAACAATAAGCAAATATGCAGTAAGCCCATCAAGTCATGCTGCCAGTCTCACAGACAACCTAACTAGTACCTCAGACAGACTAACCATGAAATCAACGAGGCGTCTCAGTGACAGCAGATGCAATAGTCATTCCCCAGTCTGATCAGTTTGTCATTGTCAGAAGGTTAACATCTGATATGGGTAGTATACAGTTGTACGTAGAATACATTCTCTCATAAAAACAACCACATTATCATATGTACTATAGCTGGTCTGGCTTTATAGAGTAAATATCATTACCCTTGACTTGAGACCTCTCCCAGGGTTAATATCATAACAGGTGACACATTACCCTCTAGCAGTCAGAAAGCAGGTTTCCTCACCACAGGACCGCGGCTATGCTGAGAATCCCATTGGTTGATGGCCTTGAGCCAGTCCTGACACAGTGGTGTTTCTGATGCCTCTGCTGCTACAGAGCTGTCATCTCATTCACCAGCACACTGCGGTAGAAAGCAGCTTGTAATGAGATGACAGTGACCTACAGTAGAGAGCCGTGTTGCTGTTTAGTGTCGGGATTACCTGTCCTCACTGGGCTACTGGCGACCAGCAccgagaggaggggagaggagagagaggacaggaggcatgaaatgaggacaggagaggaggcgagaggagagagaggacaggaggcatGAAATGAGGACAggcgaggaggggagaggagaggagatgagtggtGGTTCCTTGCTGTTCCGCTGACACTGGCTCGTTTTCTGTTTAGCTGTTCTAAGAACAATCTCCCCTCATCCACCTATGCTCATCTCATATTTGTTTGCTATGCATGCTTTCCTAATACTAGTAATActagtaatacacacacacacacacaccctctgtttATACTAAAGCAGTGTATGTAGTCATTGATGGATGCTTGCTGCTAACACAGGGCTCAGATGAACTGGAGGTACTcactccctgctcctctctgctcctgccACACTCCTGTCCTCCTTCTCACACTCCTACAACAGTGTAAATACAAAAGGGCAAAGTTCCGCATCATTACAGCTTGTGCTTCAGAAAACtaacagtttccttcctctccggctgCTCGTCTGTTGCTACCCGAGACAGACGACAGAAAGTGAACTTCTCCATTGCTCTAACCCTCTGATCCAATCACATGCTACCTGACTGCGCATCCACTCATCCACACACTCACAGTTTGCCGACCATGCAGAGATATAGATACTGCTCTGACGTAGTTCTAAGAAGATCTCTCTCTATATGAGTATGcatctgtgtgtttctgtagacctccctccctccctccctccctccctccccctcccaacAGGGAACCAAGAGCCTGTGTGATGAGAATGGCTCCGTAGCAATTAAGGTGAAGTGCTGGCTATAGCCTAAAGAAGAAGCCCAGATGGTTGTGAAGCCATTCCTCCTGCAGGCGTGCCGACCATGCCATGCAGCAGACAGCTGTGGGCGACCTCTGTTGTTTAGTGACTCGTCTTCATAATTAAGGCTCATCGCAATGAAGTAGCGATCCCATCGTCCCAGCCGTCTGCCTGCCTTCAGGGCATCAGACGGCAgagtgggtgagagggagagtgggtgagagggagagtggtagagagggagagtgggagagtgggtgagagggagagtggtagagagggagagtggtagagagggagagtgggtgagagggggagtgggtgagagggagagtgggtgagagggagagtgggagagtggtagagagggagagtggatgagagggagagtgggtgagagggagagtgggtgagagggagagtggtagagagggagagtgggtgagagggagagtgggtgagagagagggtgctgTCTGGAGCTGGAGAAAGGGcggctctgtgtgtgtatgttcgaATCTGAAGCGAATCTGAAACGAGGACGTATATGTTTATGAGGGGATAgggaaagagagggcgagagagtgtCGGATAGGGAAAGAGTGGGCGAGAGAGTGtcagatagggaaagagagaacatTTGTTTCTGTGATGGAGAGACAGTATGTGTCTGGAGAGTCTGTGTGCATCGGAGCAAGCTGACACCATCCACAGAGCACAGTGAGCTGAGTTGACCCATTGCTCTAGGAGATCCACCAATAAGCAGCTGGTCTGGTGCAGTGATAACAGCAGCCTCCTAGACTAGAGGATGActgacagccagccagacacatAGGTCGGCCTACACCTACACTCCATCTATACTCCTTAATCATAGCCAACATCTGTCCAGCCCAGGCTCGATCTCAGCAGAGTCTCGGTTTGTTCGTTTTACACTTCTGTCCACCTTGTGTGAGAGAGATCCAATCACCTCTTCATATGTGTTCTTCCTGTCACACACGCACTCCGTCCCTCGTACTACTGTAAGAGACAGACACATACTGTCCTGCTTAACCCCATAGTAGTTATAGTCATCACGGTATCTTTAGGATAATCTCAGCTGATTTAAATGCCTAAGGAGCCCCCATCCACGGTCAATCCATTGTCTGGAATGGGAGACGGGATAGAAAGAAAAGCCGATAGTAGACTGACATCTAAAAGACGTAAGGAGCGTGAGGAGCTGTGACAGGCCTGTGGCTCCCCGTCCGTCAGAGCAAAGCCCCTGTCATCACAGCCAGGGACAAAGGTCACGATGATAACCTCTTCATTAATTAAGCATGCTTTAAGGGAGATGAATTGTACTGATATTGGAGcttgctctcttttctctctttcggGGCCTGTCTGTGTCATTGACAAGGTGGATAAAGGGATGAGGATGAAAgacaagggagagaggaagagaggagggagagacagagagagaaaggaaggggggGGGCGTAAGCTCAGAGGAATTGCGTAAAGGCGATAAAGGAGCTTTCGAGAATCAGTCGGATCGTGCagtaaaaataaaacatgtctCCTTTTTCTACCCGCTGTAGAGAGAAGAGGTGGCACGGGTCTTATCCCAGCCAGCTCCGGGCTGCAGCAGACAGGACAGCTCTGTTTAAAACCATGCGTTTCCTGGTACCATTCTGAACCACTGGTCCAGAAATACAAGGTTGTTTTACCTCTTCTAACCGTCTCAAATGTTTCTAGAATTTTCTGTGGGCCCTGTCGCTGTCACTGTCGCCCACACACAAACCTCACTGAGACTGGCCTCTGAACCCAGCCACCACAACTCTGGTTTTCTGTATTTAAAGCCAGATCCATACACTAGGACATTAGCTCAGCTTACTCCTCTTCGGGTGGGGCAGAGTGTGTGTTCATCCCGGCATTATGCCCCCATCTGCACTACTTTAAAAAGATAATTATGGGCCCAGCTCTGTACCCGCCGGCTGCAGAGAGAGCCCTGTCATCTCTCTGTTTGATGTGCTGGAGAACGGGGCGACTGCAATTAAGAGTCCGAATtccccgctcttctctctctattcctccccctctccttttctctctctgacagtctGACAGAACAATTTCTCCTCAGCAGGCCAGAGTAGTAGAACTCCAAAATGGAAGACGAACAGACCATTGACACCGGGACACAGACGGAATATGAGAGCGTGGTGATGGGTATGAGAGAATTCTGATGAAGGATCATTGCCTAATAGCTAGCTGGGAAACCAGACTTAGAGAGGCTAGTCATAATCTGGCCTATTCTGGGTTGGGTTTCTCGACTCCTTACTAGCTATCTCCTCTAGTAGTGAAGCAGGAACACAGAATGACTTAGAAAGGAAACAGTAGGATGATGATTGTTAGAAGAAACATGGACTGCCACTACGGGGAGAGATTTGAGCTTCTGGATCGACCTCAGTGGCGTGAGGTCGATTTGGATAGAGGCTAACTGCGCTTTCTCGGTTTTCCTCTATACCCAGTTAAAAGTGACCGTCGTAACAATGATGAGATACAATGCTAGTCGATCAAAACCAGTAGAACTGCCCGTGTCAAAGAAAGCACGTAGCTAAATCTGTTCAGAATAACTGTTGTAGGTCATTGAGCAAAAGGTCTTCCAGAGAGCTAACCAAAAACAGCAAAGTCAAGAAATACAGTCAGACATCTGTTAAAAACAAGGTTCGAATGAACAATTGAAAAACATGGATTGCATGTTAATGTATTCCCCGACTCTTCTGGTTCGATACAGGATTTTCTGATGTTGTCACTATTTACAGTTTGTACTAAACCTCCACGATAATGTAAAAATAGAAGGACACAAAAGAAACCTCTTAAGATTTGAACAGGTGAGCAAAGCCCCATATCCTGGGTCCTCGTTGACTTGATaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU479899 False 2858 lncRNA 0.48 3 61299640 61345067
TU479895 True 5284 lncRNA 0.48 2 61299678 61305129

Neighbor

gene id symbol gene type direction distance location
hapln4 hapln4 coding upstream 13974 61267215 ~ 61285666 (+)
tm6sf2 tm6s1 coding upstream 34434 61248572 ~ 61265206 (+)
LOC118964633 polr2e coding upstream 218633 61077504 ~ 61081007 (+)
LOC110524234 LOC106613716 coding upstream 357258 60939330 ~ 60942382 (+)
LOC110524227 fbn3 coding upstream 438269 60770756 ~ 60861371 (+)
nr2c2ap nr2c2ap coding downstream 245536 61590603 ~ 61599332 (+)
LOC110524248 LOC106613729 coding downstream 292037 61637104 ~ 61655195 (+)
LOC110524251 LOC106613732 coding downstream 441380 61786447 ~ 61793643 (+)
gatad2ab NA coding downstream 463815 61808882 ~ 61840823 (+)
yjefn3 yjefn3 coding downstream 498949 61844016 ~ 62001312 (+)
G423541 NA non-coding upstream 9396 61289774 ~ 61290244 (+)
G422978 NA non-coding upstream 108175 61161197 ~ 61191465 (+)
G422951 NA non-coding upstream 192698 61106216 ~ 61106942 (+)
G422886 NA non-coding upstream 284694 61013149 ~ 61014946 (+)
G422858 NA non-coding upstream 311380 60978012 ~ 60988260 (+)
G423600 NA non-coding downstream 61010 61406077 ~ 61472572 (+)
G423629 LOC106613725 non-coding downstream 98042 61443109 ~ 61443960 (+)
G423796 NA non-coding downstream 184834 61529901 ~ 61530115 (+)
G423850 NA non-coding downstream 251966 61597033 ~ 61597447 (+)
G423847 NA non-coding downstream 261600 61606667 ~ 61607436 (+)
LOC110524226 LOC106573564 other upstream 603735 60694220 ~ 60695905 (+)
G420634 NA other upstream 2355423 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2882864 58411240 ~ 58418268 (+)
G419452 NA other upstream 3399992 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3932303 57352343 ~ 57367627 (+)
G423922 NA other downstream 376470 61721537 ~ 61722024 (+)
G424079 NA other downstream 760456 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 938085 62283054 ~ 62327772 (+)
G425224 NA other downstream 1700023 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 2331347 63676409 ~ 63684848 (+)

Expression


Co-expression Network