XLOC_023465 (pdha1b)


Basic Information

Item Value
gene id XLOC_023465
gene name pdha1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24273371 ~ 24282427 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046420
TCGATTATATATCAGTTTCATTGAACATTTTTCGTTTTTCAAAAAGGAACACAATACACACGGTCCCTAGGTTGAgcgcgaataagaagctgaaaaacggaagcgtcgCGGTTTTTAAGGTGGTCCGGATAGCATCAATAAGAAGCtgtgaataagaagctggattcatcctcgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgcctgcctgcctgcctgcctgcctgcctgcctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctcttatAAAAtctcttttaatttcttttaaattatcttttttaaagatttgctTTATTCATTACACTTTTTATATGATCTAATACTGTTTTATTAATTCGACTTTCATTATtcgaaaaattttttttttcaaattgtccACCATTATCGTTGCTGTTGCTGTGCAAACTTAAGCTGAACTTTAATTCTTGAAACAGACTGTAGTCAAATCCTCAGCCATACTGATCTAGTGTGAGTGTTTCTGGCTTCAGCTCAGTGTTTGTGAGGTTGATCCTCCAGAAACACTAGTTCACAATCAGTCCGGGGTTTGGAGCATGCAGAACATGCTGACGGTGATTGCAAACGCGCTTAAAGGTGGTGCCAAAGTGAATGGTGCCCAGACAGTGTCAGAGGGCTCCAGAGTGGTGGTATCATCACGTTCATTTGCCGACTTCACACCTCAGGCTAACTTTgacataaagAGGTGTGACCTTCATCGTTTGGACGAAGGCCCATCGGTGCAGACGGTGCTCACCAGAGAGGATGGACTCAAGTACTATCGCATGATGCAGACCATGAGACGCATGGAGCTGAAGGCAGATCAGCTTTACAAGCAGAAGATCATACGAGGATTCTGTCACCTGTATGATGGCCAgGAGGCTTGTGCTGTTGGCATTGAGGCTGGTATCAAGCCCACAGATCACCTGATCACAGCATACAGGGCTCATGGTTACACCTACACCAGAGGAGTGTCTGTGAAGGAGATCATGGCAGAGCTCACAGGCAGAAGGGGTGGTGTTGCTAAAGGCAAGGGCGGCTCTATGCACATGTATGCCAAGAATTTCTATGGCGGTAATGGTATTGTTGGTGCCCAGGTTCCTCTCGGGGCAGGTGTGGCGCTGGCATGTCAGTATCAGGGGAAGAATGAGATTTGTGTCACTCTGTACGGAGATGGAGCTGCCAATCAGGGTCAGATCTTCGAGTCGTTTAACATGGCAGCTTTGTGGAAACTCCCCTGCATTTTCATTTGTGAGAATAATAAATATGGCATGGGGACATCAGTGGAACGAGCCTCTGCCAGCACAGACTACTACAAAAGAGGAGACTTCATTCCTGGATTGAGGGTTGATGGTATGGATGTTCTTGGTGTCAGAGAAGCAACCAAGTTTGCAGCAGATTATTGCAGATCtggaaagGGTCCCATATTAATGGAGTTGCAGACATATCGTTATCATGGCCACAGCATGAGCGATCCTGGGGTCAGTTATCGCACACGTGAGGAGATCCAGGAAGTTCGCAGTAAGAGTGATCCCATCACAACGCTCAAAGACCGCATGATTAGCAGCAACATGGCCAGTTTGGAGGAGATCAAGGACATTGATGCAGATATCCGTAAGGAAGTGGAAGAAGCAGCACAGTTTGCCACCACTGATCCAGAGCCGCCGCTGGAAGATTTGTGCAACCACATCTTCTACAATGATGCTCCATTAGAGGTCAGAGGCACAAACCCCTGGACGAGACTCAAATCCATCAGTTGAAGAATTAATGCTAATGATACAGCTATTCATTCCTCTCATAATCCTATATGCACAAACAGATGGATAATTTTGATATCCATAAAAACGTAATTACATTCCTTTACAGCCGGTACTTTTAGCTTTGCAgactgttatatttatatatttggaaGCACATAGTGTTGAATGATCAATGTTTAATTCCAATATTAGAAAAATAGATTATTTTGAAAATAGATTTTAATGAGCTCAGTCCTTGTCTCTAAATGGAATTCTTAGCAATGATttataaacagttattttttatcatcatatTGCAATATGATGCTCAATATGAAGTTTTGGATACTGAATTCATTGGACTATATTTAGTTCTACATTAAATGAATTGCTGTTTGTAACAATACCGTCATTAGAACCTATGCTTACAGGAACATTTACAGAATGTTCTCTCAATGTTATGAATAAACATTACAGTAATTGAACTTCAATTAAGAGTCTTTTTTTTGTTGactttatgtttatattaataatgtTCTCAAAATGTTACCAAATAAATAATGTTGTTT
>TCONS_00046421
AGTGTTTGTGAGGTTGATCCTCCAGAAACACTAGTTCACAATCAGTCCGGGGTTTGGAGCATGCAGAACATGCTGACGGTGATTGCAAACGCGCTTAAAGGTGGTGCCAAAGTGAATGGCTCCAGAGTGGTGGTATCATCACGTTCATTTGCCGACTTCACACCTCAGGCTAACTTTgacataaagAGGTGTGACCTTCATCGTTTGGACGAAGGCCCATCGGTGCAGACGGTGCTCACCAGAGAGGATGGACTCAAGTACTATCGCATGATGCAGACCATGAGACGCATGGAGCTGAAGGCAGATCAGCTTTACAAGCAGAAGATCATACGAGGATTCTGTCACCTGTATGATGGCCAgGAGGCTTGTGCTGTTGGCATTGAGGCTGGTATCAAGCCCACAGATCACCTGATCACAGCATACAGGGCTCATGGTTACACCTACACCAGAGGAGTGTCTGTGAAGGAGATCATGGCAGAGCTCACAGGCAGAAGGGGTGGTGTTGCTAAAGGCAAGGGCGGCTCTATGCACATGTATGCCAAGAATTTCTATGGCGGTAATGGTATTGTTGGTGCCCAGGTTCCTCTCGGGGCAGGTGTGGCGCTGGCATGTCAGTATCAGGGGAAGAATGAGATTTGTGTCACTCTGTACGGAGATGGAGCTGCCAATCAGGGTCAGATCTTCGAGTCGTTTAACATGGCAGCTTTGTGGAAACTCCCCTGCATTTTCATTTGTGAGAATAATAAATATGGCATGGGGACATCAGTGGAACGAGCCTCTGCCAGCACAGACTACTACAAAAGAGGAGACTTCATTCCTGGATTGAGGGTTGATGGTATGGATGTTCTTGGTGTCAGAGAAGCAACCAAGTTTGCAGCAGATTATTGCAGATCtggaaagGGTCCCATATTAATGGAGTTGCAGACATATCGTTATCATGGCCACAGCATGAGCGATCCTGGGGTCAGTTATCGCACACGTGAGGAGATCCAGGAAGTTCGCAGTAAGAGTGATCCCATCACAACGCTCAAAGACCGCATGATTAGCAGCAACATGGCCAGTTTGGAGGAGATCAAGGACATTGATGCAGATATCCGTAAGGAAGTGGAAGAAGCAGCACAGTTTGCCACCACTGATCCAGAGCCGCCGCTGGAAGATTTGTGCAACCACATCTTCTACAATGATGCTCCATTAGAGGTCAGAGGCACAAACCCCTGGACGAGACTCAAATCCATCAGTTGAAGAATTAATGCTAATGATACAGCTATTCATTCCTCTCATAATCCTATATGCACAAACAGATGGATAATTTTGATATCCATAAAAACGTAATTACATTCCTTTACAGCCGGTACTTTTAGCTTTGCAgactgttatatttatatatttggaaGCACATAGTGTTGAATGATCAATGTTTAATTCCAATATTAGAAAAATAGATTATTTTGAAAATAGATTTTAATGAGCTCAGTCCTTGTCTCTAAATGGAATTCTTAGCAATGATttataaacagttattttttatcatcatatTGCAATATGATGCTCAATATGAAGTTTTGGATACTGAATTCATTGGACTATATTTAGTTCTACATTAAATGAATTGCTGTTTGTAACAATACCGTCATTAGAACCTATGCTTACAGGAACATTTACAGAATGTTCTCTCAATGTTATGAATAAACATTACAGTAATTGAACTTCAA
>TCONS_00046422
TGATCCTCCAGAAACACTAGTTCACAATCAGTCCGGGGTTTGGAGCATGCAGAACATGCTGACGGTGATTGCAAACGCGCTTAAAGGTGGTGCCAAAGTGAATGGTGCCCAGACAGTGTCAGAGGGCTCCAGAGTGGTGGTATCATCACGTTCATTTGCCGACTTCACACCTCAGGCTAACTTTgacataaagAGGTGTGACCTTCATCGTTTGGACGAAGGCCCATCGGTGCAGACGGTGCTCACCAGAGAGGATGGACTCAAGTACTATCGCATGATGCAGACCATGAGACGCATGGAGCTGAAGGCAGATCAGCTTTACAAGCAGAAGATCATACGAGGATTCTGTCACCTGTATGATGGCCAgGAGGCTTGTGCTGTTGGCATTGAGGCTGGTATCAAGCCCACAGATCACCTGATCACAGCATACAGGGCTCATGGTTACACCTACACCAGAGGAGTGTCTGTGAAGGAGATCATGGCAGAGCTCACAGGCAGAAGGGGTGGTGTTGCTAAAGGCAAGGGCGGCTCTATGCACATGTA

Function

symbol description
pdha1b Predicted to enable pyruvate dehydrogenase (acetyl-transferring) activity. Predicted to be involved in acetyl-CoA biosynthetic process from pyruvate. Predicted to be located in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human PDHA1 (pyruvate dehydrogenase E1 subunit alpha 1).

GO:

id name namespace
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005967 mitochondrial pyruvate dehydrogenase complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor molecular_function
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-96 Predicted to enable pyruvate dehydrogenase (acetyl-transferring) activity. Predicted to be involved in acetyl-CoA biosynthetic process from pyruvate. Predicted to be located in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human PDHA1 (pyruvate dehydrogenase E1 subunit alpha 1).

Ensembl:

ensembl_id ENSDARG00000010555

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046420 False 2432 mRNA 0.41 12 24273371 24282427
TCONS_00046421 False 1712 mRNA 0.44 11 24273449 24281806
TCONS_00046422 True 543 mRNA 0.52 6 24276566 24281792

Neighbor

gene id symbol gene type direction distance location
XLOC_023464 rps6ka3b coding downstream 1742 24183752 ~ 24271629 (-)
XLOC_023463 eif1axb coding downstream 104838 24164227 ~ 24168533 (-)
XLOC_023462 zgc:112982 coding downstream 110170 24101811 ~ 24163201 (-)
XLOC_023461 NA coding downstream 174492 24095316 ~ 24098879 (-)
XLOC_023460 lyz coding downstream 212739 24035863 ~ 24060632 (-)
XLOC_023466 NA coding upstream 133897 24416324 ~ 24503022 (-)
XLOC_023467 NA coding upstream 209776 24492203 ~ 24492517 (-)
XLOC_023468 NA coding upstream 271366 24553793 ~ 24695757 (-)
XLOC_023469 armc1 coding upstream 419353 24701780 ~ 24724284 (-)
XLOC_023470 pde7a coding upstream 450880 24733307 ~ 24797455 (-)
XLOC_023665 dre-mir-735 misc upstream 13895534 38177961 ~ 38178027 (-)
XLOC_023451 NA non-coding downstream 630466 23383112 ~ 23642905 (-)
XLOC_023450 CT573302.1 non-coding downstream 1000012 23273242 ~ 23273359 (-)
XLOC_023448 NA non-coding downstream 1055341 22878941 ~ 23218030 (-)
XLOC_023446 CT573489.1 non-coding downstream 1901271 22371986 ~ 22372100 (-)
XLOC_023471 NA non-coding upstream 518349 24800776 ~ 24829401 (-)
XLOC_023487 NA non-coding upstream 1468209 25750636 ~ 25754146 (-)

Expression


Co-expression Network