XLOC_023474 (slc51a)


Basic Information

Item Value
gene id XLOC_023474
gene name slc51a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24961899 ~ 24983047 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046436
GGCCCCTTTAACAAGTGCAGGGATTCCTCTGTACACAAAGTCTTCAAAACACAAGTCAGGTTTCTCCTCCATTTATTAGTTTCACGAATGCTGGAACTAACCGGTGCTTACTGTCAGGTTTCAAGGACTATAGTTTACCCTGGACCTCTCAAATAAACCGGGATTATCTCTGAAAATGGAGACGTCCAACTTTACACTATTCGATCCGAGATGCAGAGCAGAGGCTCCGTTCGCTATCGATGCTATTAAGCAGCTGGATATCTTTGGCAAAGTCCTCTACACTGTGCTGACTTTAATGGCCACAGCATCCATGCTGGTATTCATTGAAGAATGCATCTACATCTATAAAAAAGTGCCGGCACATAAAAAAAGCACCATTATCTGGGTAACCGGAGTAGCACCAGTCATGGCTATTATGTCTTGTTTGGGCATGTGGGTTCCAAGGGCCACAATGTTCACTGATATGACATCAGCCACATACTTTGCAATTGTGGTCTTCAAGTTCCTGATTCTCATGATTGAAGAGGTGGGAGGGGACAATGCTTTTCTCAGACGCTGTGAGAAACAGACGTTTAAGATCAGCACAGGAccttgctgctgctgctgcccaTGTCTGCCAAATGTCCCCATCACACGACGATCTCTGTTCATATTGAAACTGGGCTCCTACCAGTTTGCACTGATGAAATTGGTCCTCACCATCTTTTCTATTGTCCTCTGGACAAATGGCAGCTTTAGTTTAGCCAATGTTTCGGCAAGTGGAGCGGCCATATGGATAAACTCATTTATTGGCGTTCTCACCATTATCGCCCTTTGGCCTGTTGCGATCATGTTCATGCATGTGCGAGAGGCATTGCGCACTTTAAAAATAGTCCCTAAATATGCCATGTATCAGTTGGTGCTGATCCTGAGCCAGCTGCAAACAGCCATTATTAACATACTGGCATTGAATGGGACCATTGCCTGTTCGCCACCCTACAGCTCCCAGGCCCGTGGATACATGATGAGCCAGCAGCTGTTGATCGTAGAGATGTTCATCATCACTCTAGTGACCCGTGTTTTATACAGACGTCAATATGAGCCCATACCAGAACCAGATGATGTCGAGGAGAAAAAGACTGTCCTCAGCTCCAAAAAAGCCATAGATGTTGCCTGAGAAGAACCGACTGTTGCGTGTGAATgaatttgtataatatatatttgaggCCGGTTATTAAAAATGGTCATTACCCTTATATATTCTTCATGTATGCACTTGCTAGTATCTAATATCTTGCCAGATGTTTTTATATTGACATCAATGCAAGTGATTGGGCTGCAGAACTAGatgtttacactttatattgGGTATATCTGAACAATGATGTTTTTAAACTTCTGTTCCTGCATTGAAGGTGTTggtctgtttattttttgttaatagaCTATAAAGCATTATTAATCTCATACGTCATTGTGGTGCAGGTTTCCAGTGAAGTCAGATAAAGTCATCTCTATGGCTTAATGATAGGCTGCTTAAAAGAGATGACTTTTGGAGCTGGATAAAGGTCAGCATTCTTTCATGTTGCTAAATTGTACGTTCGTATAATATCCTTTGTAAAATCTGTGCCTTTCTGGTATATTGTTGAATACAGATATTTCAAACAAT
>TCONS_00046437
CTGGAACTAACCGGTGCTTACTGTCAGGTTTCAAGGACTATAGTTTACCCTGGACCTCTCAAATAAACCGGGATTATCTCTGAAAATGGAGACGTCCAACTTTACACTATTCGATCCGAGATGCAGAGCAGAGGCTCCGTTCGCTATCGATGCTATTAAGCAGCTGGATATCTTTGGCAAAGTCCTCTACACTGTGCTGACTTTAATGGCCACAGCATCCATGCTGGTATTCATTGAAGAATGCATCTACATCTATAAAAAAGTGCCGGCACATAAAAAAAGCACCATTATCTGGGTAACCGGAGTAGCACCAGTGAGTTTTGTAAAGTTTTACTCCTAATCACTCCTAATTTGAATTGACATGTCAGGTTTGAGCTTTATCTGCGTCCCACCCAAGCGGAAACACAAACTCAATATACAGTTAGTCATTTCTAGTGTGTTACCGCCTGAGTGATTATGAGTCTCAAGTTCATTTTCACTTCACAAGTTTATCTATTTTTCAGGTCATGGCTATTATGTCTTGTTTGGGCATGTGGGTTCCAAGGGCCACAATGTTCACTGATATGACATCAGCCACATACTTTGCAATTGTGGTCTTCAAGTTCCTGATTCTCATGATTGAAGAGGTGGGAGGGGACAATGCTTTTCTCAGACGCTGTGAGAAACAGACGTTTAAGATCAGCACAGGAccttgctgctgctgctgcccaTGTCTGCCAAATGTCCCCATCACACGACGATCTCTGTTCATATT

Function

symbol description
slc51a Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be part of protein-containing complex. Predicted to be integral component of membrane. Is expressed in liver; pancreas; pancreas primordium; and pancreatic bud. Orthologous to human SLC51A (solute carrier family 51 subunit alpha).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0015721 bile acid and bile salt transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-10 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be part of protein-containing complex. Predicted to be integral component of membrane. Is expressed in liver; pancreas; pancreas primordium; and pancreatic bud. Orthologous to human SLC51A (solute carrier family 51 subunit alpha).

Ensembl:

ensembl_id ENSDARG00000045306

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046436 False 1648 mRNA 0.42 8 24961899 24983047
TCONS_00046437 True 754 lncRNA 0.43 4 24976336 24982957

Neighbor

gene id symbol gene type direction distance location
XLOC_023473 pdk3a coding downstream 2213 24944352 ~ 24959686 (-)
XLOC_023472 crhb coding downstream 79903 24847683 ~ 24881996 (-)
XLOC_023471 NA coding downstream 132498 24800776 ~ 24829401 (-)
XLOC_023470 pde7a coding downstream 164444 24733307 ~ 24797455 (-)
XLOC_023469 armc1 coding downstream 237615 24701780 ~ 24724284 (-)
XLOC_023475 zdhhc20b coding upstream 6098 24989145 ~ 25004611 (-)
XLOC_023476 nup58 coding upstream 25164 25008211 ~ 25030243 (-)
XLOC_023477 phldb2b coding upstream 109269 25092316 ~ 25166720 (-)
XLOC_023478 plcxd2 coding upstream 190423 25173470 ~ 25186895 (-)
XLOC_023479 hhla2b.2 coding upstream 253334 25236381 ~ 25244638 (-)
XLOC_023665 dre-mir-735 misc upstream 13194914 38177961 ~ 38178027 (-)
XLOC_023468 NA non-coding downstream 266142 24553793 ~ 24695757 (-)
XLOC_023466 NA non-coding downstream 458877 24416324 ~ 24503022 (-)
XLOC_023467 NA non-coding downstream 469382 24492203 ~ 24492517 (-)
XLOC_023461 NA non-coding downstream 863020 24095316 ~ 24098879 (-)
XLOC_023487 NA non-coding upstream 767589 25750636 ~ 25754146 (-)
XLOC_023490 NA non-coding upstream 1048201 26031248 ~ 26032271 (-)
XLOC_023491 NA non-coding upstream 1249653 26232700 ~ 26236578 (-)
XLOC_023496 NA non-coding upstream 1371649 26354696 ~ 26369185 (-)
XLOC_023503 NA non-coding upstream 1658852 26641899 ~ 26648023 (-)

Expression


Co-expression Network