G425218


Basic Information

Item Value
gene id G425218
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63034813 ~ 63071017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU481710
cagagagagaaacagagagagaaacatagatataaacagaaactgacagaatagtgagagagaaacagagagaaatggagagagaaacagagagaaacagagagataaacagagagaagcagagagaaacagacagagaaagagagaaacaaagagcgaaacagagagagaaagagagagaaacagggagaaacaaagagagaaacaaagagagaaagagagagagaaacagagagaaaaagaaactgacagaatagtgagcgagaaacacagagagaaacagagagaagcagagaaacagagagagaaacagagagataaacaaagataaacagagagagaaacagaaactgacagaatagtgagagagaaacacagagagaaaaagagagaaacagagagagaaacagggagaaacagagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagaaacagagagagaaacagagagaaacagagagagaaactgagagaaacagagagagaaacagagagagaaacaaagagagaaagatagaaagaaacagagaaagaaacataaaactgacagaatagtgagagagaaacacagagagaaaaagagagagaaacagggagaaaaagagaaaaacagagagagaaacaaagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaagcagagagagaaacagagagagaaacagagagagaaactgagagagaaacaaagagagaaacagagagagaaacagagagagaaacagagagagaaacagagagaaacagagagagaaacagagagagaaacagagagagaaacatagagaaacagagagagaaacagggagaaacagagagagaaacagagagagaaacagagagaaacagagagagaaacagggagaaacagagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagggagaaacagagagaaacagagagagagaaacagagagagaaacagagagaaacagagagaaacacagagagaaacagagagagaaacagggagaaacaaagagagaaacaaagagagaaagagagagagaaacagagagaaaaagaaactgacagaatagtgagcgagaaacacagagagaaacagagagaagcagagaaacagagagagaaacagagagataaacaaagataaacagagagaaacagagagagaaacagagagaagcagagagagaaacagagcgagacacagagagaaacagagagaagcagagagaaacagagagagaaacagagagagaaacagaaagaaacagagagaaacagagagagaaacagggagaaacagagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagggagaaacagagagaaacagagagagaaacagaaactgacagaatggtgagagagaaacagagagaaacagagagaaacagagagagaaacaaaaagagaaagatagagagaaacagagagagaaaccgagagaaacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaatagaaactgacagaatagtgaga
>TU481712
cagagagagaaacagagagagaaacatagatataaacagaaactgacagaatagtgagagagaaacagagagaaatggagagagaaacagagagaaacagagagataaacagagagaagcagagagaaacagacagagaaagagagaaacaaagagcgaaacagagagagaaagagagagaaacagggagaaacaaagagagaaacaaagagagaaagagagagagaaacagagagaaaaagaaactgacagaatagtgagcgagaaacacagagagaaacagagagaagcagagaaacagagagagaaacagagagataaacaaagataaacagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagaaacagagagaagcagagagaaacagagagagaaacagagagagaaacagaaagaaacagagagaaacagagagagaaacagaaactgacagaatcgtgagagagaaagagagagaaacagggagaaacagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagaaacagggagaaacagagagagaaacatagactGACAGAATagcaagagagaaacaagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaaccgagagagaaacagagagagagagggaaacagagagagaaacagagagaaacagagagagaaaccgagagaaacagagagaaacagagagagaaacaaagagagaaacagaaactgacagaatagtgagagagaaacacagagagacacagagaaaaaccgagagaaacagagagagaaacaaaaagagaaagatagagagaaacagagagagaaaccgagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagagagaaacagagagaaacagagagagaaacagggagaaacagagagaaacgagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaacc
>TU481715
cagagagagaaacagagagagaaacatagatataaacagaaactgacagaatagtgagagagaaacagagagaaatggagagagaaacagagagaaacagagagataaacagagagaagcagagagaaacagacagagaaagagagaaacaaagagcgaaacagagagagaaagagagagaaacagggagaaacaaagagagaaacaaagagagaaagagagagagaaacagagagaaaaagaaactgacagaatagtgagcgagaaacacagagagaaacagagagaagcagagaaacagagagagaaacagagagataaacaaagataaacagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagaaacagagagaagcagagagaaacagagagagaaacagagagagaaacagaaagaaacagagagaaacagagagagaaacagaaactgacagaatcgtgagagagaaagagagagaaacagggagaaacagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagaaacagggagaaacagagagagaaacatagactGACAGAATagcaagagagaaacaagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaaccgagagagaaacagagagagaaacagagagaaaccgagagagacagagagagaaagagagagaaacagagagagaaatagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagagagaaacagagagagaaacagggagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagaaacagagataaacagggagaaacagagagagaaacatagactGACAGAATAgtaagagagaaacaagagagagaaacagagagagaaacagaaactgacagaatagtgagagaaacagagagaaacagagagagaaacagagagagaaacagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagagaccgagagagacagagagaaacagagagggaaacagagagaaacagagagaaacagagag
>TU481713
gagagaaactgagagaagcagagagagaaacagagagagaaacagagagagaaacagagagaagcagagagaaacagacagagaaagagagaaacagagagaaacagagagagaaacagagagagaaacagagagaaacagagagaagcagagagaaacacagagaaacagacagagaaagagagaaacagagagaaacagagagagaaacagagagaaacagagagagaaacagggagaaacagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacacagagagacacagagaaaaacagagagaaacagagagagaaacaaaaagagaaagatagagagaaacagagagaaaccgagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagagagaaacagagagaaacagagagagaaacagggagaaacagagagaaacgagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaacc
>TU481714
gagaaacagagagagaaacagagagagaagcaaagagagaaagatagaaagaaacagagaaagaaacataaaactgacagaatagtgagagagaaacacagagagaaaaagagagagaaacagggagaaacagagaaaaacagagagagaaacaaagagagaaacagaaactgacagaatacagagagagaaacagagagagaaacagagagagaaacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacatagagaaacagagagagaaacagggagaaacagagagagaaacagagagagaaacagagagaaacagagagagaaacagggagaaacagagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagggagaaacagagagaaacagagagagaaacagagagagaaacagagagaaacagagagaaacacagagagaaacagagagagaaacagggagaaacaaagagagaaacaaagagagaaagagagagagaaacagagagaaaaagagagaaacagagagagaaacaaagagaaaaagatagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacacagagagaaacagagagagaaacggggagaaacagagagaaacagagagagaaacaaagagagaaacagaaactgacagaatagtgagagagaaacacagagagacacagagaaaaaccgagagaaacagagagagaaacaaaaagagaaagatagagagaaacagagagagaaaccgagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagagagaaacagagagaaacagagagagaaacagggagaaacagagagaaacgagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaacc
>TU481711
agagagaaattagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaaccgagagagacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacaaagagagaaagatagagagaaactgagagagaaaccgagagaaacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagaaactgacagaatagtgagagagaaacagagagggaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagagagaaacagagagggaaacagggagaaacagagagaaacgagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaaccgagagagacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacaaagagagaaagatagcgaGAAACTGAGAGCaaccgagagaaacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagataagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagggagaaacagagagaaacagagagaaaccgagagagacagagagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagggaaacagaaactgacagaatagtgagagagaaacagagagggaaacagagagagaaacagagagaaacagagagagaaaccgagagaaacagagagagaaacagagagagaaacaaagagaaaaagatagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacacagaaagaaacagagagagaaacagggagaaacagagagaaacagagagagaaacaaagagagaaacagaaactgacagaatagtgagagagaaacacagagagacacagagaaaaaccgagagaaacagagagagaaacaaaaagagaaagatagagagaaacagagagagaaaccgagagaaacagagagagaaacagggagaaacagagagaaatgagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaaccgagagagacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacaaatagagaaagatagagagaaactgagagagaaaccgagagaaacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagaagcagagagaaacagacagagaaagagagaaacagagagaaacagagagagaaacagagagagaaacagagagaaacagagagaagcagagagaaaaacagagaaacagacagagaaagagagaaacagagagaaacagagagagaaacagagagaagcagagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacacagagagacacagagaaaaaccgagagaaacagagagagaaacaaaaagagaaagatagagagaaacagagagagaaaccgagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagagagaaacagagagaaacagagagagaaacagggagaaacagagagaaacgagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481710 False 1683 lncRNA 0.40 2 63034813 63037380
TU481712 False 1219 lncRNA 0.41 5 63034813 63071017
TU481715 False 1228 lncRNA 0.41 3 63034813 63066308
TU481713 False 672 lncRNA 0.41 2 63056486 63071017
TU481714 False 1224 lncRNA 0.40 3 63062008 63071017
TU481711 True 2472 lncRNA 0.41 4 63066837 63071017

Neighbor

gene id symbol gene type direction distance location
LOC110524278 LOC106613761 coding upstream 142633 62885401 ~ 62892180 (+)
LOC110524276 LOC106613760 coding upstream 213610 62808921 ~ 62821203 (+)
LOC110524275 LOC105011538 coding upstream 232473 62797704 ~ 62802340 (+)
LOC110524274 LOC106613755 coding upstream 238333 62791979 ~ 62796480 (+)
LOC110524272 LOC106613754 coding upstream 249236 62725130 ~ 62785594 (+)
LOC110524284 LOC106613766 coding downstream 226066 63297083 ~ 63303403 (+)
LOC118964772 NA coding downstream 229428 63300445 ~ 63300512 (+)
LOC110524287 LOC106613768 coding downstream 243519 63314536 ~ 63319938 (+)
unc13a LOC106613770 coding downstream 251522 63322539 ~ 63376215 (+)
foxq2 LOC106614005 coding downstream 483621 63554638 ~ 63557123 (+)
G425216 NA non-coding upstream 2311 63022670 ~ 63032502 (+)
G425165 LOC106613762 non-coding upstream 94654 62934257 ~ 62940159 (+)
G425136 NA non-coding upstream 134317 62895401 ~ 62900496 (+)
G425119 NA non-coding upstream 180573 62854027 ~ 62854240 (+)
G425097 NA non-coding upstream 221874 62812738 ~ 62812939 (+)
G425259 NA non-coding downstream 38046 63109063 ~ 63119375 (+)
G425260 NA non-coding downstream 39805 63110822 ~ 63113852 (+)
G425354 NA non-coding downstream 180486 63251503 ~ 63251829 (+)
G425359 NA non-coding downstream 185519 63256536 ~ 63256756 (+)
G425308 NA non-coding downstream 250761 63321778 ~ 63322263 (+)
LOC110524265 LOC106613745 other upstream 727876 62283054 ~ 62327772 (+)
G424079 NA other upstream 928941 62105523 ~ 62105872 (+)
G423922 NA other upstream 1312789 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 2338908 60694220 ~ 60695905 (+)
G420634 NA other upstream 4090596 58942728 ~ 58944217 (+)
nfil3-4 LOC106614010 other downstream 605397 63676409 ~ 63684848 (+)
sac3d1 sac3d1 other downstream 1106011 64177028 ~ 64183138 (+)
LOC110522985 NA other downstream 1172585 64243153 ~ 64244790 (+)
G427476 NA other downstream 1921084 64992101 ~ 64997138 (+)
LOC110524338 LOC106584398 other downstream 1953698 65024444 ~ 65028828 (+)

Expression


Co-expression Network