XLOC_023476 (nup58)


Basic Information

Item Value
gene id XLOC_023476
gene name nup58
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 25008211 ~ 25030243 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046440
TGTAGGTGGCAATGTGGATGAACAAACAATGTTTGAATTTTACAGAGAGGAAACAGACGAAGAGGACATTGTGCGCGCAAAGCATTGAGCTGCAATATTTTCAATGCCTTGAAACggattttagttattttaaaaacactgaattaGACCCCTGTTTCGTCGTTTAAAGTTGCTCGTTCAAATTTTCTTCATACCGTCCAGAATTTCGCGGCAGCTGCTTTTATTTTGCACCTTATGTCGTAAGCAGTGTGTTTCGGGCCTCCACGAGGTCGGACCCGCTTGATTCTGATTGTCAAGTTTTGCAGATTTAAGTCCAGAATGTCTAGCTTTAACTTCGGCACAACTACCCTCGGGACCACCGGAGCACCAGCAGCAGCTGGAGGAGGAGGGTTTTCATTTGGAGCTGCGACCAGCACACCTGCTGCAGGCACAGGTGGATTCTCATTTGGAGGTTTCGGGGCACAGACCTCCACACCGGCACCCGCCACCACCAGTACCACCTCCACATTGGGATTTGGGACCAGTTTATTTGCACAGAAACCAACAACTGGATTCAGCTTGAGTACACCTGCCTCAGCTGCTGCATCCACTAGTGGCCTTTCGTTAGGGAGTCTTACCACCTCGACCGCTGCTTCCACTGGCTTCAGTTTGGGCTTTGGAAAGCCAGCGGCCTCAGCTACACCTTTCTCTCTAACTACCACCACCGCCTCTGCACCTGCGGCAACAGGCCTCTCTCTGGGATCCGTCCTAACCTCCACAGTTCCTCAGACCAGCTCCACTGGCTTTTCCCTCAACTTAGGAGCAGCGGCAGCCACTTCCTCTGCTCCTGCATCAGGTTTCTCCTTTGGATCAAGTCTTTTCTCCAACCCCACCCTTACAGGTTTGGGACAGTCCACTTTAGGTGGACCTTTGAGTCTGGGCGGTTTAGTCTCTACCTCTGTCGCAACCACCTCAGCTCCTGCTCCCAGTCTCGGCCTGGGTGGAGTAGACTTCAGTACTTCCTCTGAAAAGAACACAGACAAGTTGTCCAGCACCAGACCTGAGGACAGTAAAGCCCTTAAAGATGAAAACCTGCCAGCTCCGATCTGTCAGGATGTGGACAATTTTCAGAAATTTGTCAAGGAACAGAAGCAAGTCCAGGAGGAGATTAGCAGAATGTCCTCTAAACCCATTCTCAAAGTTCAAGAGGACATCAAGATGCTCAGACAGCTCTTGTCCATCTGTGCCAGCGGGCTGCAGAGAAATTCCCTCTCCATAGATAAATTAAAGCTGGAAACTTCTCAGgAATTGAAAAATGCTGATATTGCGCTTCGCACCCAGAAGACCCCGCCTGGACTCCAACATGAAAACACAGCACCATCAGACTATTTCCGGGCACTAGTGGAGCAGTTTGAGGTGCAGTTACAGCAGTACCGTCAGCAGATTGAAGAACTGGAGAATCATCTGACCACTCAGGGCAGTGGCTCCCACATCACCCCTCAAGATTTGTCGATGGCTATGCAGAAGCTCTACCAGACGTTTGTTGCGCTTGCTGCTCAGTTGCAGGGAGTTCATGAGAATGTTAAAACTCTAAAGCATCAGTACCTGGGCTACAGACGAGCCTTCCTAGAGGACTCCACTGACATCTTCGAGTCGAAACGTGTTGCTGGCAAGAAATGGCAGAGTTCTCCGCGTGTCACCACAGGCCCCGCCCCCTTCGGCAGCGTTCCCAATGCAGCGGCCGTAGCCATGGCTGccactctcactcagcagcagCAGCCGGCTCCAGgACCACAGGCACCCTTGGGAGCCAGTTTTGGCACTCCCTTTTCCTCGGGTATTGGCTCTAGCATGGGCTCATCCAGCCTCGGAGGGTTTGGAACTTCGAACACGTCCGGCTTTAATTTCAGCAACCCAGGCATCAACGCTTCCGCCGGATTGACTTTTGGTGTTTCCAACACCCAGACTCCTGGTTTCGGGGCAGGAGGGCCACTGCTACAGCTCAAAAAGCCACCAGCCGGAAACAAGAGGGGCAAGAGATAAAACAGGATGCTGTTATGGGGTAAAGGGAAGCGTCACGAGGTAAAGATGATGTGTGTCtcagatctttatttttatatatatatatctgtctgtaCATATATATTTTCTCTGTTGGATTCCATTAAAAGGATTTCTTTTCAGTTCTCCCTTTTACCCTGGTGACTGTGCTGTTCTTTTGTTTACTGTTGTCCCTCGAAATGACATTCGATGTAATGGAGCATATTTTGTGACGCACAGAAGACCTGCGAAGGGATTTGCTCTCGGGTTTGAAGATACTCATGAAGTCAGTTTACCTGTGTGTTAGCTTGATTTTAAACCACATGCTCTCTGTGATTGTAAATGCGTCATCCCATCCTGTTAAGATGACCTGTGTACTTGGTTTTCTGGTTAATTGTACCAAATAGATGTCAACCTGTATGATGAGAATGTTACGTTTGTACACACCTTAtttgtttctgtctttttttGTTACAAAATAGTGAAAAGATTCTATACTTAAGCTTTGAGCAGACAAGTATTTTTCGACTTGAAAGAAGTGTTTGTTATTAAAAGAAGTGACTGATAA
>TCONS_00046441
CTGTGCCAGCGGGCTGCAGAGAAATTCCCTCTCCATAGATAAATTAAAGCTGGAAACTTCTCAGgAATTGAAAAATGCTGATATTGCGCTTCGCACCCAGAAGACCCCGCCTGGACTCCAACATGAAAACACAGCACCATCAGACTATTTCCGGGCACTAGTGGAGCAGTTTGAGGTGCAGTTACAGCAGTACCGTCAGCAGATTGAAGAACTGGAGAATCATCTGACCACTCAGGGCAGTGGCTCCCACATCACCCCTCAAGATTTGTCGATGGCTATGCAGAAGCTCTACCAGACGTTTGTTGCGCTTGCTGCTCAGTTGCAGGGAGTTCATGAGAATGTTAAAACTCTAAAGCATCAGTACCTGGGCTACAGACGAGCCTTCCTAGAGGACTCCACTGACATCTTCGAGTCGAAACGTGTTGCTGGCAAGAAATGGCAGAGTTCTCCGCGTGTCACCACAGGCCCCGCCCCCTTCGGCAGCGTTCCCAATGCAGCGGCCGTAGCCATGGCTGccactctcactcagcagcagCAGCCGGCTCCAGGGTTTGGAACTTCGAACACGTCCGGCTTTAATTTCAGCAACCCAGGCATCAACGCTTCCGCCGGATTGACTTTTGGTGTTTCCAACACCCAGACTCCTGGTTTCGGGGCAGGAGGGCCACTGCTACAGCTCAAAAAGCCACCAGCCGGAAACAAGAGGGGCAAGAGATAAAACAGGATGCTGTTATGGGGTAAAGGGAAGCGTCACGAGGTAAAGATGATGTGTGTCtcagatctttatttttatatatatatatctgtctgtaCATATATATTTTCTCTGTTGGATTCCATTAAAAGGATTTCTTTTCAGTTCTCCCTTTTACCCTGGTGACTGTGCTGTTCTTTTGTTTACTGTTGTCCCTCGAAATGACATTCGATGTAATGGAGCATATTTTGTGACGCACAGAAGACCTGCGAAGGGATTTGCTCTCGGGTTTGAAGATACTCATGAAGTCAGTTTACCTGTGTGTTAGCTTGATTTTAAACCACATGCTCTCTGTGATTGTAAATGCGTCATCCCATCCTGTTAAGATGACCTGTGTACTTGGTTTTCTGGTTAATTGTACCAAATAGATGTCAACCTGTATGATGAGAATGTTACGTTTGTACACACCTTAtttgtttctgt
>TCONS_00047201
CCTCTGTCGCAACCACCTCAGCTCCTGCTCCCAGTCTCGGCCTGGGTGGAGTAGACTTCAGTACTTCCTCTGAAAAGAACACAGACAAGTTGTCCAGCACCAGACCTGAGGACAGTAAAGCCCTTAAAGATGAAAACCTGCCAGCTCCGATCTGTCAGGATGTGGACAATTTTCAGAAATTTGTCAAGGAACAGAAGCAAGTCCAGGAGGAGATTAGCAGAATGTCCTCTAAACCCATTCTCAAAGTTCAAGAGGACATCAAGATGCTCAGACAGCTCTTGTCCATCTGTGCCAGCGGGCTGCAGAGAAATTCCCTCTCCATAGATAAATTAAAGCTGGAAACTTCTCAGgAATTGAAAAATGCTGATATTGCGCTTCGCACCCAGAAGACCCCGCCTGGACTCCAACATGAAAACACAGCACCATCAGACTATTTCCGGGCACTAGTGGAGCAGTTTGAGGTGCAGTTACAGCAGTACCGTCAGCAGATTGAAGAACTGGAGAATCATCTGACCACTCAGGGCAGTGGCTCCCACATCACCCCTCAAGATTTGTCGATGGCTATGCAGAAGCTCTACCAGACGTTTGTTGCGCTTGCTGCTCAGTTGCAGGGAGTTCATGAGAATGTTAAAACTCTAAAGCATCAGTACCTGGGCTACAGACGAGCCTTCCTAGAGGACTCCACTGACATCTTCGAGTCGAAACGTGTTGCTGGCAAGAAATGGCAGAGTTCTCCGCGTGTCACCACAGGCCCCGCCCCCTTCGGCAGCGTTCCCAATGCAGCGGCCGTAGCCATGGCTGccactctcactcagcagcagCAGCCGGCTCCAGGGTTTGGAACTTCGAACACGTCCGGCTTTAATTTCAGCAACCCAGGCATCAACGCTTCCGCCGGATTGACTTTTGGTGTTTCCAACACCCAGACTCCTGGTTTCGGGGCAGGAGGGCCACTGCTACAGCTCAAAAAGCCACCAGCCGGAAACAAGAGGGGCAAGAGATAAAACAGGATGCTGTTATGGGGTAAAGGGAAGCGTCACGAGGTAAAGATGATGTGTGTCtcagatctttatttttatatatatatatctgtctgtaCATATATATTTTCTCTGTTGGATTCCATTAAAAGGATTTCTTTTCAGTTCTCCCTTTTACCCTGGTGACTGTGCTGTTCTTTTGTTTACTGTTGTCCCTCGAAATGACATTCGATGTAATGGAGCATATTTTGTGACGCACAGAAGACCTGCGAAGGGATTTGCTCTCGGGTTTGAAGATACTCATGAAGTCAGTTTACCTGTGTGTTAGCTTGATTTTAAACCACATGCTCTCTGTGATTGTAAATGCGTCATCCCATCCTGTTAAGATGACCTGTGTACTTGGTTTTCTGGTTAATTGTACCAAATAGATGTCAACCTGTATGATGAGAATGTTACGTTTGTACACACCTTAtttgtttctgt
>TCONS_00046442
GTGCGCGCAAAGCATTGAGCTGCAATATTTTCAATGCCTTGAAACggattttagttattttaaaaacactgaattaGACCCCTGTTTCGTCGTTTAAAGTTGCTCGTTCAAATTTTCTTCATACCGTCCAGAATTTCGCGGCAGCTGCTTTTATTTTGCACCTTATGTCGTAAGCAGTGTGTTTCGGGCCTCCACGAGGTCGGACCCGCTTGATTCTGATTGTCAAGTTTTGCAGATTTAAGTCCAGAATGTCTAGCTTTAACTTCGGCACAACTACCCTCGGGACCACCGGAGCACCAGCAGCAGCTGGAGGAGGAGGGTTTTCATTTGGAGCTGCGACCAGCACACCTGCTGCAGGCACAGGTGGATTCTCATTTGGAGGTTTCGGGGCACAGACCTCCACACCGGCACCCGCCACCACCAGTACCACCTCCACATTGGGATTTGGGACCAGTTTATTTGCACAGAAACCAACAACTGGATTCAGCTTGAGTACACCTGCCTCAGCTGCTGCATCCACTAGTGGCCTTTCGTTAGGGAGTCTTACCACCTCGACCGCTGCTTCCACTGGCTTCAGTTTGGGCTTTGGAAAGCCAGCGGCCTCAGCTACACCTTTCTCTCTAACTACCACCACCGCCTCTGCACCTGCGGCAACAGGCCTCTCTCTGGGATCCGTCCTAACCTCCACAGTTCCTCAGACCAGCTCCACTGGCTTTTCCCTCAACTTAGGAGCAGCGGCAGCCACTTCCTCTGCTCCTGCATCAGGTTTCTCCTTTGGATCAAGTCTTTTCTCCAACCCCACCCTTACAGGTTTGGGACAGTCCACTTTAGGTGGACCTTTGAGTCTGGGCGGTTTAGTCTCTACCTCTGTCGCAACCACCTCAGCTCCTGCTCCCAGTCTCGGCCTGGGTGGAGTAGACTTCAGTACTTCCTCTGAAAAGAACACAGACAAGTTGTCCAGCACCAGACCTGAGGACAGTAAAGCCCTTAAAGATGAAAACCTGCCAGCTCCGATCTGTCAGGATGTGGACAATTTTCAGAAATTTGTCAAGGAACAGAAGCAAGTCCAGGAGGAGATTAGCAGAATGTCCTCTAAACCCATTCTCAAAGTTCAAGAGGACATCAAGATGCTCAGACAGCTCTTGTCCATCTGTGCCAGCGGGCTGCAGAGAAATTCCCTCTCCATAGATAAATTAAAGCTGGAAACTTCTCAGgAATTGAAAAATGCTGATATTGCGCTTCGCACCCAGAAGACCCCGCCTGGACTCCAACATGAAAACACAGCACCATCAGACTATTTCCGGGCACTAGTGGAGCAGTTTGAGGTGCAGTTACAGCAGTACCGTCAGCAGATTGAAGAACTGGAGAATCATCTGACCACTCAGGGCAGTGGCTCCCACATCACCCCTCAAGATTTGTCGATGGCTATGCAGAAGCTCTACCAGACGTTTGTTGCGCTTGCTGCTCAGTTGCAGGGAGTTCATGAGAATGTTAAAACTCTAAAGCATCAGTACCTGGGCTACAGTCTGTTTGTGCTTTATATGGGTGGACTTCTGTCTTGAGTGGCAGAGAATATCGTGTTTATAGATAGGGTTTGGtctcagttattttattttttattttttctcaacaGCACTATTGTAGCCATCACTACACTAAGTAGCCACTCTGTAGAGTAAATCACACCTGAAACACAGATTTAAATGCTTTGACATTAATTTCCAGTTTGTAACATTATCTACTAAATCTAAATTTCTTCATGGTGGATATGAAAATTGATCATGTGAAGTGCCAACATACACTTTTCTGCCAGCAAAACCATGGTGGCTGAGGCTTTTTGAgcaatatgtttgtttttagtgGTGGTGATCTAAAAAATAGGTTAAATACTGCTGATGAAGTGGATGTGGAGAAGCGATTGTCACTTTTCAGGACAGGAACACATTTAGTTATTCCATATTTTTTTTCAGATGGTGGCGCTAGGGTTGGGTACAGAATATGTAACTGTATGGACTGGACTGAATCAGCATAAGAATTTTAGTGCCTAATTTCAGTGCCATTGGTGTTGTGACAAgaacgtaagaagcatcaaggggtacatcaaaggcacaTAGATAAGTGTTGTGccacaccatctctaaatatttaattctaaacaactctGAGAGTTACGGACCCCATTGGCGATGttaggtgtttgtttttttagcttAGGAAATGCATCCGCGCATACAGTAAGCGAGTAGTGACTCCCTTCAGAgtcatcaacacgcatgatcgcgtttaTGAAATGTGCTTAAACTAAGcttctaaagtatggctatattttacaagcaa
>TCONS_00046443
CCTCTGTCGCAACCACCTCAGCTCCTGCTCCCAGTCTCGGCCTGGGTGGAGTAGACTTCAGTACTTCCTCTGAAAAGAACACAGACAAGTTGTCCAGCACCAGACCTGAGGACAGTAAAGCCCTTAAAGATGAAAACCTGCCAGCTCCGATCTGTCAGGATGTGGACAATTTTCAGAAATTTGTCAAGGAACAGAAGCAAGTCCAGGAGGAGATTAGCAGAATGTCCTCTAAACCCATTCTCAAAGTTCAAGAGGACATCAAGATGCTCAGACAGCTCTTGTCCATCTGTGCCAGCGGGCTGCAGAGAAATTCCCTCTCCATAGATAAATTAAAGCTGGAAACTTCTCAGgAATTGAAAAATGCTGATATTGCGCTTCGCACCCAGAAGACCCCGCCTGGACTCCAACATGAAAACACAGCACCATCAGACTATTTCCGGGCACTAGTGGAGCAGTTTGAGGTGCAGTTACAGCAGTACCGTCAGCAGATTGAAGAACTGGAGAATCATCTGACCACTCAGGGCAGTGGCTCCCACATCACCCCTCAAGGTTTGTTATACCAGACTGAACAAAGCACTGTCATGTGTTAGCTCTGATATCCACTTAACTTTATGATATCCTCTGTCATGTAGATTTGTCGATGGCTATGCAGAAGCTCTACCAGACGTTTGTTGCGCTTGCTGCTCAGTTGCAGGGAGTTCATGAGAATGTTAAA

Function

symbol description
nup58 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to act upstream of or within mRNA transport; nucleocytoplasmic transport; and protein transport. Part of nuclear pore. Orthologous to human NUP58 (nucleoporin 58).

GO:

id name namespace
GO:0006913 nucleocytoplasmic transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2326 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to act upstream of or within mRNA transport; nucleocytoplasmic transport; and protein transport. Part of nuclear pore. Orthologous to human NUP58 (nucleoporin 58).

Ensembl:

ensembl_id ENSDARG00000033965

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046440 False 2587 mRNA 0.48 13 25008211 25030243
TCONS_00046441 False 1177 processed_transcript 0.47 6 25008317 25024023
TCONS_00047201 False 1463 lncRNA 0.48 8 25008317 25026099
TCONS_00046442 False 2337 mRNA 0.46 12 25018709 25030173
TCONS_00046443 True 715 lncRNA 0.47 5 25023425 25026099

Neighbor

gene id symbol gene type direction distance location
XLOC_023475 zdhhc20b coding downstream 3600 24989145 ~ 25004611 (-)
XLOC_023474 slc51a coding downstream 25164 24961899 ~ 24983047 (-)
XLOC_023473 pdk3a coding downstream 48525 24944352 ~ 24959686 (-)
XLOC_023472 crhb coding downstream 126215 24847683 ~ 24881996 (-)
XLOC_023471 NA coding downstream 178810 24800776 ~ 24829401 (-)
XLOC_023477 phldb2b coding upstream 62073 25092316 ~ 25166720 (-)
XLOC_023478 plcxd2 coding upstream 143227 25173470 ~ 25186895 (-)
XLOC_023479 hhla2b.2 coding upstream 206138 25236381 ~ 25244638 (-)
XLOC_023480 hhla2b.1 coding upstream 214703 25244946 ~ 25256670 (-)
XLOC_023481 adgrg2a coding upstream 255515 25285758 ~ 25301711 (-)
XLOC_023665 dre-mir-735 misc upstream 13147718 38177961 ~ 38178027 (-)
XLOC_023468 NA non-coding downstream 312454 24553793 ~ 24695757 (-)
XLOC_023466 NA non-coding downstream 505189 24416324 ~ 24503022 (-)
XLOC_023467 NA non-coding downstream 515694 24492203 ~ 24492517 (-)
XLOC_023461 NA non-coding downstream 909332 24095316 ~ 24098879 (-)
XLOC_023487 NA non-coding upstream 720393 25750636 ~ 25754146 (-)
XLOC_023490 NA non-coding upstream 1001005 26031248 ~ 26032271 (-)
XLOC_023491 NA non-coding upstream 1202457 26232700 ~ 26236578 (-)
XLOC_023496 NA non-coding upstream 1324453 26354696 ~ 26369185 (-)
XLOC_023503 NA non-coding upstream 1611656 26641899 ~ 26648023 (-)

Expression


Co-expression Network