G426283


Basic Information

Item Value
gene id G426283
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63929266 ~ 63932609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU482894
TTTTTTGATAAGCAAATTATCCATTTTTCTTTCAGTCTAAAGAAACTTTACAATATAAAGAAACATACAAAGGACATATTTATTACCTACACAAGACACCTAACTCCCTAAGACAAGATCTGAACTATCCTACTATGAAATACAAAGCAAACCCAAGGGACAGACTGCTTCATATAGAATACTGCCATGTCATCAGAAAGGACAATGAACGGTACAGGAGAATATTTATATCCCCTCCCCTTGACCCCTGTCCCACACAACCATCCCATCACCCGCAAATCTTCCTAATGTTACAGTATTATACATCACAATAGAAGTACAGAGATGACCAACAATTGTTATACACAGAGGACTGAGAGGATCAGTGAGAATCAATATATACAACACTATTTCATCAGGAGTGAATAGCAAGGACACAGTTTTTCCGCATAAGCATTACTTTTGATCTATTCTTTAATTTAAAATGACATTAAGTATGTTTTCCTTTTTAAAGTTCTTAAATTGATAAAAATCCTtcatattaaaaactgtaataataGGTGGTCACATGTTTTAATGAGACGATGGCCTTTTGAGTAGGCAATAACCATTCTTAGAAACCATTTGAGATGATTTCTATTGGTAATAGAAGACAAGGACAGAGTGAGGACGCTCCAATTGCAAGAATAAACAGCATCATTGACATCATACATCCCCTTCACCGCCCTCTCGATCCTTACAAGATAATAAAACGACGCCTCAAACCCAGCTAAATGGATGACAGTTTATTTTCACATATGTATCCCGACCAGAAATAAGTGTTTAGGGTGCAGTTACTGTATGTTCACATGTTCAAGTAAATTTACATGCATATTTCATTTTTACCACAATTTTGTTTTGGCCAATCAAAATGTCCAGCACATCGTCTCTTTATTATGAAAACATGGACAGTTCATTTATAATTGACTTTCAGCTGTATACATTGGTAGTGACTGACATATCAAAACATGTCAATGATATCAAAATGCATTATACAGTATTTACAAAAAAGGAAATAAAAAGAAAGGAGGGCTCAAGAGTGTGAGGATGGGGCAGTAAGGGGgcggggggacggggggggggggacagagggctGTGTGCCAGTCAGTCTGCTAGAGGAACACTGGAGTTAGTCGTTCCTCAAAACAACTTAGCCAGAAGATGTCCCTGTTCAGCTCTGAATCCAAGCTACTCCATAAAGTATCTGCCAACACTATAGCAAGGTCACTGGCAAAAGACCAATCACAGACAGAAGCCAGAATGATATTAAATAAGAACAGAAATATGTAGCTTGTTGAAAAATGACTTTTTGAAATAAACAGTATCTGCCGCTTAGCACAACACACAAGAAAATCACATGAAAGTTTGAGGAACAGCCTTGGGTCAATTCACTCAATAGGTGCAGATATTCTATGGCCTTTTTTGCACACAATTTCTTGAATAGACTTCATAGaaattaaaacaaaacaaaaaaactagAATAAAAGACATTGTTTGACTCACAATTCAGTCCAACCAGGTGGAATTCTCTCATTTCTCAAAGTACATATTCAAGTGTGAGTAGGTGGACTAAAAGCTACTCGGTTCCATAGAGCACTCCTTTCTTGTAGCGGGAGAGCGAATTAAGCCACACCGTAAAGTCACTCCAGTCATTTCACACTCCCATCCCCAGTGGTGACACCCCATACCCAGGATCTAGCAGCCCATGGACAAGCCCAGACCCAGAGGGAACAGGTGGATGGGAGCTCTGTGGAGTTGGCCCCTCTCTAAACTATGGTTGCATGTGAGAGGGGTCAGACACCGGATCATAAGGATCTGTGAGGTCAACCCTAACTGGAAGGAAGCAGATGGAGGTTTGTACACCAACAACGACATGAAAACCGATAGCAAGTGGCCTGTATGACAATCAGTAAATAAAGATTGAGCCTGGAGATTGTATGCAGGGTAACAGTCAAAGCAATGCAGGAGGAGAAGGATCCACTTTCAGGATTCACAGACAAGTTGTATATcaaaacaacaaataaacaacCACAATAAAAGCTAAATATGTTGTATTTACAGTCAAGAGCAAATCCATAGAAGAACAGAGGGTCTGTAAAACCCTTTCCGTCTTTACTGAATTGGAAGGACACAGGTCGCAGAATAATACATGTTCAAAGCCACCTGAACTGAAAGTAGAATTAGCAATTGTCCAAATTACATTTGATCAGTCCATCTTTGCACAGTAATGCAACAAGCCTGAACAAACACTTATATACACTGACTCAACATTTTGGGAGGGGTACGTGTGACCAGACATGTAGAAGACTGACAGACTAGAGTACCAAAGGATAAAGAAGTTTCTGATATCGCCTCCATTTTCACATTGACGTTTTGGGGAACTCCAGTGATAACATGGATGGGGAGTGTCAGGAAGGATCATTCCTAGATGAGTGATGTCAAGCAGGTGAACAGCTATTCTTGTACTCCTATCGCACTCTGCTTGACTGTTTACATTTTGGTGCCATGGTTTTCTGGTAGTAAAGACATCGGCTACAAGTTCTGCGAAGAACAGAGAGGTATGCGTAGGGCGTTGAGACAAAAACAAACGAACAAGAAACATCAAATACCTAAAATCATGTAAACAGAAGTGTCATTGTGCATTTTTTGAGTGTGTGCTTATTCTGTTGTCGATGTTGTTGAGATACAATGTGCCCTTAACAGGAAATGATAACTACATCATTATAACAATATCAATTATGAAAATGATATCATTATTATTAATAAAACACAAACATATAAAGTGTTCTTGCCCTAATGCATCAGCAGTTAAGCTTTTCATTTCAAAACAAGGACACATTAACTGAATGAAGGTGAGCCTCAAACCTCACAACTGCTGCAtgcaaaaacaacatttgaaCAAACAAATAATAACATGATAAAGTAGTAGAGTGGAGCCACCAGCCTTGATGCTGAGAGAACTGTTGCTGAGGAGGGTTCCTGCAGACAGCCAGAGTCCCCCACTCTCACTGTCCTGGGCCTGTGAGGAAACCAGGCGGAGAGGGAGAGTCACTGAGCTGGCTCTTCCTGTGGCTCTGAGACTGTTTCCTGCTCAGAAGCCCCACTTTGCACACACTGGGATGGGTGATCTTGATGGGAGTCCTGCGCTCCAGTGACATCCCGGGGGGCTGCAAAACACAGCACGCCAtccgggggaggagggataaaaaaagaaacaaaataaaatagaataaaagataaaataaaaaataaatcacacaCTCATC

Function

NR:

description
single-stranded DNA-binding protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU482894 True 3284 lncRNA 0.40 2 63929266 63932609

Neighbor

gene id symbol gene type direction distance location
LOC110524307 NA coding upstream 111266 63816548 ~ 63818313 (+)
peak3 oaz1 coding upstream 130599 63789124 ~ 63829666 (+)
nfil3-4 LOC106614010 coding upstream 244418 63676409 ~ 63684848 (+)
si:dkey-172o19.2 LOC106614009 coding upstream 257262 63670201 ~ 63672004 (+)
onecut3a LOC106613776 coding upstream 292087 63613897 ~ 63637179 (+)
crlf1b LOC106613786 coding downstream 213487 64146096 ~ 64158106 (+)
sac3d1 sac3d1 coding downstream 244446 64177028 ~ 64183138 (+)
LOC110524317 LOC106613471 coding downstream 251838 64184447 ~ 64237088 (+)
LOC110522985 NA coding downstream 310544 64243153 ~ 64244790 (+)
shc2 LOC106613792 coding downstream 314888 64247497 ~ 64275959 (+)
G426278 NA non-coding upstream 14069 63913585 ~ 63915197 (+)
G426173 NA non-coding upstream 57171 63869376 ~ 63872095 (+)
G426248 NA non-coding upstream 61562 63867465 ~ 63867704 (+)
G426287 NA non-coding downstream 7921 63940530 ~ 63943183 (+)
G426340 NA non-coding downstream 105758 64038367 ~ 64086741 (+)
G426380 NA non-coding downstream 161027 64093636 ~ 64093875 (+)
G426395 NA non-coding downstream 191601 64124210 ~ 64124596 (+)
G426441 NA non-coding downstream 277561 64210170 ~ 64214053 (+)
G425224 NA other upstream 877736 63045090 ~ 63051530 (+)
LOC110524265 LOC106613745 other upstream 1622329 62283054 ~ 62327772 (+)
G424079 NA other upstream 1823394 62105523 ~ 62105872 (+)
G423922 NA other upstream 2207242 61721537 ~ 61722024 (+)
G427476 NA other downstream 1059492 64992101 ~ 64997138 (+)
LOC110524338 LOC106584398 other downstream 1092106 65024444 ~ 65028828 (+)
G427747 NA other downstream 1521247 65453856 ~ 65521380 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G151738 NA non-coding NC_056720.1 CM032089.1 11075896 ~ 11077069 (+)