G426287


Basic Information

Item Value
gene id G426287
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63940530 ~ 63943183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU482898
CAGACTCCCCCTCCTCAGATCTGCATTAGGAAGAACACAACACCTCTGCTGCTGCTATCCCTGAAGGGGTAGTAACACTGAACACAGAACGGATGGCTATACTGAGCCAgtcatgtgtatgtatgtaccgTATCTACAGTACTGCCCACCACCACAAGAGGGCAGTGTGGAACTactgagagaggcaggtagagCACAAAGCCAaactgaaacacaacaaacaaagcCTGGATGAACAACAGCACAATACACACTCATTGTCATTCCTTTCTTACATTCCAGCGGGCAGAGGCAGCAGCTCTACAGGCTCATGGCATGGTAACATGTCAGCTCGGTGGGGAGAGACTGCCCCGAGTGTCCGTCCCCCCCGAGGAGACTGGAGAACAGTGCGCTGACAGTCGTTTAGCATGTTTCTGTGAGTCACTGCCGTGTATCTATGATTCCTGCCTCAGCGGTCAGGAATGTCAGTCGATATGCTACTTCCAGACTAGGCTACAGACAGACCGTTGATAAAGTGAACAACAGagtggttggtggtggtagtagagagagcgagagcgagagaaagagaaagagaaagagagaaagagaaagataaagagagagagagaagggttggcCCAGGAATGCCAACATTCCTTCTCCAGTGGTCCCATTCACTCATCACTTCTTCTTCCATTAAGTATTTTCAAACTTTTACCTCTAGGATCCAGTGTAACCTACCATAGAGACCAAGCCATCTCCAAACACAATGGGTAGTCCAACTCGACAGAGTTCAGCACCTGATTCTCAACAAGAGAGTAGCTACTATACCTAAGCTAGACAAGTCTACCTATCGGTACCTCGACTCAGACACATTCAACTGACCTCAAACTCAGTCTTGATTTAGAGTTTACACCCAGGCTACAGAACTACGATACGTTCAATTGTGATCCAACTTCAATGACAGTTAGCGACTATGGAGAGCCATTCCTGTAACAGAACATATAGATTAGAAACCATCTCTGTTCCATTTATCGCCACCGTTTACTCCTTCAGTGTTTGTAATACCAATGGATTGACATTGTTTTCTTCTATCCCCACTGGGCCAACATGCTGTTAGTGTGAGCCGGCAGTTTCTCCTCGTCCTCTCCTAGTGTGAGTTGGGCCTGCCCTTCCCAGAGGGGCTGCTGCAGTGGAGTTTTGGCGTGAGGATTATTAAGCGGGCTGACCCCTGCTATACCAGGGAGAATCGCAGATCCGGGCCAGACGCCAACATGCAGGCTTTGTGGTCCTCCttccacacttctctctctcctctcctgcaggAGCCTGATCTGAGTCTTGGCCTGTAAGGTACAGATTAGGGGAGTCTTGAAGCTGCGGGGgccccccctctacccccccgCCCAGTCTTCACTCTCTGGGCTGCTGCTACCACGGCAGTTAATTACCCCTCTCTTCTGCATCTGGGACGGATGCTAGAAAACACACTGCCTGCTactactgtacacacatacacacagccatgcacaatcatactgtatccagtactgtacacacacacacagccatgcacaatcatactgtatccagtactgtacacacatacacagccatgcacaatcatactgtatgcagtactgtacacacatacacagccatgcacaatcatactgtatgcagtactgtacacacatacacagccatgcacaatcatactgtatgcagtactgtacacacacagccatgcacaatCATATTGTAt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU482898 True 1747 lncRNA 0.49 2 63940530 63943183

Neighbor

gene id symbol gene type direction distance location
LOC110524307 NA coding upstream 122530 63816548 ~ 63818313 (+)
peak3 oaz1 coding upstream 141863 63789124 ~ 63829666 (+)
nfil3-4 LOC106614010 coding upstream 255682 63676409 ~ 63684848 (+)
si:dkey-172o19.2 LOC106614009 coding upstream 268526 63670201 ~ 63672004 (+)
onecut3a LOC106613776 coding upstream 303351 63613897 ~ 63637179 (+)
crlf1b LOC106613786 coding downstream 202913 64146096 ~ 64158106 (+)
sac3d1 sac3d1 coding downstream 233872 64177028 ~ 64183138 (+)
LOC110524317 LOC106613471 coding downstream 241264 64184447 ~ 64237088 (+)
LOC110522985 NA coding downstream 299970 64243153 ~ 64244790 (+)
shc2 LOC106613792 coding downstream 304314 64247497 ~ 64275959 (+)
G426283 NA non-coding upstream 7921 63929266 ~ 63932609 (+)
G426278 NA non-coding upstream 25333 63913585 ~ 63915197 (+)
G426173 NA non-coding upstream 68435 63869376 ~ 63872095 (+)
G426248 NA non-coding upstream 72826 63867465 ~ 63867704 (+)
G426172 NA non-coding upstream 116621 63822737 ~ 63823909 (+)
G426340 NA non-coding downstream 95184 64038367 ~ 64086741 (+)
G426380 NA non-coding downstream 150453 64093636 ~ 64093875 (+)
G426395 NA non-coding downstream 181027 64124210 ~ 64124596 (+)
G426441 NA non-coding downstream 266987 64210170 ~ 64214053 (+)
G426453 NA non-coding downstream 298761 64241944 ~ 64242197 (+)
G425224 NA other upstream 889000 63045090 ~ 63051530 (+)
LOC110524265 LOC106613745 other upstream 1633593 62283054 ~ 62327772 (+)
G424079 NA other upstream 1834658 62105523 ~ 62105872 (+)
G423922 NA other upstream 2218506 61721537 ~ 61722024 (+)
G427476 NA other downstream 1048918 64992101 ~ 64997138 (+)
LOC110524338 LOC106584398 other downstream 1081532 65024444 ~ 65028828 (+)
G427747 NA other downstream 1510673 65453856 ~ 65521380 (+)

Expression


Co-expression Network