G427120 (LOC106613801)


Basic Information

Item Value
gene id G427120
gene name LOC106613801
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64662168 ~ 64668926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU483856
GAGAGAGCAAGagaaaaaTAGAGTAGAATTTAAAACCAAGCATGGCAAATATAAGTAGGACGATTAGGGAGAAGGgcgtaggggagaggaggaaggctggcATGGATACATAGCAGGTATACAGGACCACAGCCCTCCGATGCTGCTGATATGcggtggagggagaaagagagggagctcTAGTCGGACTTGTCCCCGTCCTCCTCACGGTGGTTGTCAGCTCCCTCACGGGACGCCTTCTCTTCCTTGGCCAGCTGGGCCTGCGAGgcaaggatggaggagagggagaagaggcctGAGGAGGAGGTGACGGCCGGCAGGGTGGACTGGCTCAGGCCCAGGGGCATGGGGGTCATGGGCAGGGCCAGACCCTGGAGCTGGGACAGCTGGTGAGCCTGGAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483856 True 402 lncRNA 0.59 2 64662168 64668926

Neighbor

gene id symbol gene type direction distance location
tle2a LOC106613798 coding upstream 93764 64520297 ~ 64568404 (+)
LOC110524325 lpp2 coding upstream 168027 64460935 ~ 64494141 (+)
LOC110524324 LOC106613796 coding upstream 213562 64416798 ~ 64448606 (+)
LOC118964637 NA coding upstream 324220 64333957 ~ 64337948 (+)
LOC110524320 LOC100196527 coding upstream 336560 64297442 ~ 64325608 (+)
LOC110524331 LOC105011595 coding downstream 142315 64811241 ~ 64842855 (+)
LOC110524337 ubxn6 coding downstream 330740 64998569 ~ 65011606 (+)
LOC110524338 LOC106584398 coding downstream 355518 65024444 ~ 65028828 (+)
LOC110524340 fsd1 coding downstream 383354 65052280 ~ 65060054 (+)
mpnd LOC106591182 coding downstream 414815 65083741 ~ 65090497 (+)
G427031 NA non-coding upstream 151951 64509891 ~ 64510217 (+)
G427024 NA non-coding upstream 155747 64506217 ~ 64506421 (+)
G426562 NA non-coding upstream 168043 64447738 ~ 64494125 (+)
G426564 NA non-coding upstream 195172 64418219 ~ 64466996 (+)
G427121 NA non-coding downstream 32983 64701909 ~ 64706624 (+)
G427157 NA non-coding downstream 40052 64708978 ~ 64709770 (+)
G427123 NA non-coding downstream 42752 64711678 ~ 64722880 (+)
G427490 NA non-coding downstream 257986 64926912 ~ 64927789 (+)
G427491 NA non-coding downstream 259508 64928434 ~ 64929092 (+)
LOC110522985 NA other upstream 417639 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 482782 64177028 ~ 64183138 (+)
nfil3-4 LOC106614010 other upstream 977929 63676409 ~ 63684848 (+)
G425224 NA other upstream 1610638 63045090 ~ 63051530 (+)
LOC110524265 LOC106613745 other upstream 2355231 62283054 ~ 62327772 (+)
G427476 NA other downstream 323175 64992101 ~ 64997138 (+)
G427747 NA other downstream 784930 65453856 ~ 65521380 (+)
G428696 NA other downstream 1473153 66142079 ~ 66142605 (+)
G429156 NA other downstream 2313023 66981949 ~ 67048164 (+)

Expression


Co-expression Network