G427906


Basic Information

Item Value
gene id G427906
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64994105 ~ 64997116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU484729
TCCTTGCACGTTAAAActgcaggacaagatatcttttgactcaataaactgcctttttgttacaactgaaatccactctgtccagcgtccatgatttggtctcaactctcctgTAAGTAAATCATCAACACTATCAAACTCACATAactgtgatgatcaatttgaagaaagaagttcaacagcaggttgaaactgagtgtaaAACATGGTAGTTCTGGATGTTGTTTGAAagcctaacacaacaaaatagacAGCGCTAAGGTGATGATTAACTCAAAACATCCATATGCATATTATAGGTTATGCATACGCATGTGCTTAAAAGCCCAAGCCCgtttaatttgttttattttttattatgattgtgccattatacaatacatagcctaccaTATATTAAGCATTGCAGAAAAACGTAAAACAAAACTGATTTTCAAATGTCTTTGGGACATAATTTGTCAGGCCTATGCCCCGaaataaaacacatttcagtCATCGTTTTTGAGTGTGGATTTCATTATTATGCATACTGggtggactggttaccttatgctacacTCCAAAATGTCaatccatgagtctgggagagaaagTATAGCCCTAGGCggtgctgttggttcattgattgtgcagggcagcgtacagttagcctacaattagtgAATATGTATTTGAATATGTATTTTGAATAGCCAAGTAATAGGGAatttttatattttcataattaattgggCGACACATTACCTTCAGctatacagaatatctcaccaccatgCATCTCATCCGCTCTCTAATTTATTCCTTTCTCGAGTGCGCAGAGGGGCAACAGTTTAGTGAATTATGTTCCTTTgcgaaaacatgttactatcgatgtttccgaacagatttcacttggtttcccaaatgaagCACTGGATAGCTGCAGGATTAGGGTTGGAGaacccatggcatacagagtttggaCGGAATATCACCAGTCGTGCAGCGATTCTCAAACAGTGGATGACGCTTGGAGTGAAATAAGTATtcttatatttatttctcagcaGCTCATATTAAGCATATCTCCACTATAAAACGGAAGTAGCCTACCCGGCATCATTGACAAACGGACTGGTGGGAAAGCCTCCATTTTCTATTTGAGTGTATACAGATGACGTCTTTATTCCCCCACCCATGTTCCTCTcatttgataatgggccattctaaagCTAAACAAATTGTACATATTTGTAAAGACAAGAttcaattgagaatagtctgatcattgaaaatatgatcacttaatgagagaacagcttttgcagcctgaggcaaggaaaaGAGTGCTTTTTTTgcgactttctcaaatcatcaatagcctaACCCCTTGATTTTCCCACATTTAGTTAGGTTATAGTTTAATTATAAAAtcgattaaattgtttttttcttctcctcaatctacacacaataacccataatgacaaagcaaaaacagtttttatacatttttgctaatttaaaaaatcgaactgaaatatcacattttcctaagtattcagaccctttactcagtactttgttgaagcacttttggcagcgattataacCTTGAGTtttctacaagcttggcacacctgtatttggggagtttctcagattcttctctgtagatccgctgaaactctgtcaggttggatggggagcgttgctgcatagtgaagccactcctgctttgccttggctgtgtgcttaaggctgttgtcctgttggaaggtgaaccgtcgtcccagtctgaggtcctgagcgctctggagaaggttttcatcaaggatctctctgtaccttgctccGTCCATCTtagcctcaatcctgactagtttcccagtccctgccactgaaaaacatccccacagcatgatgctgccacccccatgcttcaccatagggatggtgccaggtttcctccagacgtgacacttggcattcaggccaaagagttcaatcttggtttcatcagatgaCAGAATGTTGTTTGTCTTGATCTTTTGGCTAACTACAAGCaagctatcatgtgccttttactgagaagtggcttccgtctggatggtggagtgctgcagagatggttgtcattctggaaggttctctcatctccacagaggaactctagagctgtgtcagagtggccatcgggttcttagtcacctccctgaccaaggccattctcccccgatttctcagtttggccgggcggccagctctaggacgagtcttggtggttccaaacttcctccatttaaggatgatggaggccactgtcttcttggcTTTGGTACtgttgtggaaattcttacacagggacacttgAAATCAATCTTAATATCTTGAAGTCAATCTTTAAtaatctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtagtttgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaggtgtgcgttctctaattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttaatattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttaatattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccaccc

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU484729 True 2992 lncRNA 0.43 2 64994105 64997116

Neighbor

gene id symbol gene type direction distance location
LOC110524335 LOC106584403 coding downstream 3098 64983341 ~ 64991018 (-)
LOC110524334 LOC106613806 coding downstream 11421 64939266 ~ 64982684 (-)
LOC110524333 LOC106613805 coding downstream 46687 64929844 ~ 64947418 (-)
LOC110524332 LOC106613803 coding downstream 82909 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 coding downstream 183441 64701867 ~ 64810664 (-)
LOC110524336 chaf1a coding upstream 14523 65011639 ~ 65022842 (-)
LOC110524339 LOC106613811 coding upstream 33363 65030479 ~ 65051482 (-)
LOC110524344 stap2 coding upstream 63050 65060166 ~ 65083747 (-)
LOC110524345 sh3gl1 coding upstream 94064 65091180 ~ 65109379 (-)
rorca rorc1 coding upstream 124708 65121824 ~ 65137960 (-)
G427910 NA non-coding downstream 65886 64927772 ~ 64928219 (-)
G427909 NA non-coding downstream 67359 64926270 ~ 64926746 (-)
G427386 NA non-coding downstream 213965 64779875 ~ 64780140 (-)
G427360 NA non-coding downstream 218644 64718887 ~ 64775461 (-)
G427902 ubxn6 non-coding upstream 13437 64999708 ~ 65011598 (-)
G427950 NA non-coding upstream 87143 65084259 ~ 65085437 (-)
sema6bb LOC106613817 non-coding upstream 184792 65181687 ~ 65333174 (-)
G428035 NA non-coding upstream 225281 65222397 ~ 65222600 (-)
G428048 NA non-coding upstream 254826 65251942 ~ 65252280 (-)
G427287 NA other downstream 425725 64566681 ~ 64568380 (-)
LOC110522986 LOC106613472 other downstream 707746 64283744 ~ 64297376 (-)
G425810 LOC106613766 other downstream 1690711 63300924 ~ 63303394 (-)
G428132 NA other upstream 373000 65370116 ~ 65382590 (-)
LOC110524398 LOC106613863 other upstream 1789935 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 2813489 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 3343088 68331871 ~ 68352828 (-)

Expression


Co-expression Network