G427902 (ubxn6)


Basic Information

Item Value
gene id G427902
gene name ubxn6
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64999708 ~ 65011598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU484709
TTTTATGGGGGGATACAGCAATATCTTGATGCAACCTTCATCTTTATTACAGGCAGGTTTAAAAGCAACAAAACATGACTGAGCTTTGATACCTAGACAGAGCATGACCTTCATTTTCTAGTTATTCTTAAACAAGGGTAGGAAAACATTTCTTAGCACATTTGTTAATTGCTGCTGTTCATGTCTGGACTGAACTGAAACATTGGAGGTTATGCCTCAACGCACACAGAAGCAGTGGACGTGCTGTGAGGAGAGGTAGGTTGTCATTCCAGCCATCACCTGGGATAAGCcgcagcaacaaaaaaaattgttggttacatacagtacaaacTAACCAAAATCACAGATTTCCATGCTGCTGAAATCAAATAACATTGATAATTTAGAAATATAATAGGAAATTACTCAATTGAATGACTTACAAAACCCTTATTCAATAAAGAAAGCTAACATCTGGAGCTCTGTCCAGTAACCTTCACTTTTAAGGTACAGGTATAGCTTGTTGCTGTAAACTTAGTGTTAGTGAGGTTCAAAATAGAATATTACAAGTTCTCTTAAATAAAATAGCTTAACCGATATACATTGTCTGGCTCACAAGAACAGCAACTGAAACCTTAGCACTTGACAACCAGTCTGGTCACCACCACCCATTCGCTCATATGTAAAGCCAGTATTGTATGTCAGTATTTGTTGCGTAAGCAGGATACACATTGAAGCGGAGCAGAAGGGTGACACTGACAACAGGATCTCATACCATGCTGAGCTCTCTGTAGGAGTAAGGGAGCCATTTCAGATCATCCTACATTTCAAGGtacaatacaaaaaaaacacTGCATGGCATTATGTTTCCTTTAAAGGATTAGTTGTGTATTTCTACAGCCTTTGAAATGTGGTTTAGGGATGAAGGTGTCATCTCCAACCTGGAGGTGGAGACGCAGGGACAGTTCAGCCAAGGGTTTGAATATTCTTCAGTAGCACTGGCTTGAGGAGAGCAGCAGAAATGTCTGCTTGCACTGCGGCATCCCAAGAAAATGTCAGCAGAACCGCAGggacCAGGCTACATTCATTCAGGGCCAACTCTTGGGCCTCCCGGAGTTTGTGTCCTCCTGGCGCCACCAGCTCAAAGGGCTGCCAGCCGTCCACCAGGGAGTCCCGCACAAACTGGAAGAGCACAGACACCTTGTCCCAGGCCAGGAAGGTGCCCTGCAGTATGTTTCCATCAGGCAGTCGTATTCTCAGCAGGGTGTAGTTgtacttcctcctctccctctgctcctctctctcccgcaTGGCTTTGGTACGCAGCATGGTGTTCTTCTCCACCGCCTCGCTCTTTTGCTGCTGCTCCCTCTTGAGCTCCTCTGCAGTGAGGTTGTAGAACTCTGGGGGTAGTTCGAAACGCATGGCGTTGGGGGAGGGTCTGAAGGTCTGGGGCTGGTGGTCCAGCTGGGCTCTGACTGGCTCTCCCCTTTGCAGCCGGTCCATACTATCCTTCATCACCTCCAGGGCCTCCGGGTCATGCTCCATCAGCACCAGGAACTCTTCACTCTCCTCCTGTCCCTCCACATCCAGCATGATGCTCTGAAAGCCCACAGCCTGCAAGAACTCCCGACTGCCCTCCACAGTCTTCACCTTCtcCTGGAACACCTTGTTACTGAGTTTGATCTTCCTGTACTTCTCCTCTGTGGGGTTCTTACAGATGTTTTCAATGTACTTGCTTATGATGTCCACTGCAGCCTTGACTTTCTCCCTGTCCTTGTTGAAGGTATGAACCATCATTATGGAAGCCTCCACTGCGTCCTCTTCAAACCGCATGAAAATGGCCTCTTTAATGTgcacttctctctcgctcttagtTAAGGTGGCTCCAGTAAGCGGGCAGGTGAAATACACACCTGTTACTGAGAGAAATGCCGGATCCTTAACACTGGAGCCCTCAACAGCTGTTATCTTTTCCTTCTCGGTCGCTGCTACTGCTGCAGCTTCTGCCTCAAGCTCTCTTTTCACCTGGAGCCGGATGGCATCCTGTGAGGTTTGTGCCCGTGGGCGTGGTTGCCCCTCGATCCTGGCCATAGCTGCAGCCCCTGCCTTCTGAGCTCCTTCAGTGGGAGCAGCATGATGGGGCCTGGCAGGGCCACTGTTCTGCACCACTCGGGGCTTGGAGCTGCCGCCTTCTGCGAGTTTCTTTCCAGGCCCCGCTGACTTGAATTTTATATCTTTCTTTATGTCCTCGAAAAATTTCTTCATTGTTTACTGTTTTTCACAAGAAAATAACCTTATGCCTAACCGTAAATTAAGATCAAAAAGCAAATTTTGTTTTCAtaaatttttacaatatagcacATTTGGACTTTGTGGCTATGCTATCTAGTGGAAACACGAA
>TU484710
TTTTATGGGGGGATACAGCAATATCTTGATGCAACCTTCATCTTTATTACAGGCAGGTTTAAAAGCAACAAAACATGACTGAGCTTTGATACCTAGACAGAGCATGACCTTCATTTTCTAGTTATTCTTAAACAAGGGTAGGAAAACATTTCTTAGCACATTTGTTAATTGCTGCTGTTCATGTCTGGACTGAACTGAAACATTGGAGGTTATGCCTCAACGCACACAGAAGCAGTGGACGTGCTGTGAGGAGAGGTAGGTTGTCATTCCAGCCATCACCTGGGATAAGCcgcagcaacaaaaaaaattgttggttacatacagtacaaacTAACCGAAATCAAATAACATTGATAATTTAGAAATATAATAGGAAATTACTCAATTGAATGACTTACAAAACCCTTATTCAATAAAGAAAGCTAACATCTGGAGCTCTGTCCAGTAACCTTCACTTTTAAGGTACAGGTATAGCTTGTTGCTGTAAACTTAGTGTTAGTGAGGTTCAAAATAGAATATTACAAGTTCTCTTAAATAAAATAGCTTAACCGATATACATTGTCTGGCTCACAAGAACAGCAACTGAAACCTTAGCACTTGACAACCAGTCTGGTCACCACCACCCATTCGCTCATATGTAAAGCCAGTATTGTATGTCAGTATTTGTTGCGTAAGCAGGATACACATTGAAGCGGAGCAGAAGGGTGACACTGACAACAGGATCTCATACCATGCTGAGCTCTCTGTAGGAGTAAGGGAGCCATTTCAGATCATCCTACATTTCAAGGtacaatacaaaaaaaacacTGCATGGCATTATGTTTCCTTTAAAGGATTAGTTGTGTATTTCTACAGCCTTTGAAATGTGGTTTAGGGATGAAGGTGTCATCTCCAACCTGGAGGTGGAGACGCAGGGACAGTTCAGCCAAGGGTTTGAATATTCTTCAGTAGCACTGGCTTGAGGAGAGCAGCAGAAATGTCTGCTTGCACTGCGGCATCCCAAGAAAATGTCAGCAGAACCG

Function

symbol description
ubxn6 Orthologous to human UBXN6 (UBX domain protein 6).

NR:

description
UBX domain-containing protein 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU484709 False 2383 TUCP 0.47 12 64999708 65011598
TU484710 True 1022 lncRNA 0.40 2 65010553 65011598

Neighbor

gene id symbol gene type direction distance location
LOC110524335 LOC106584403 coding downstream 19546 64983341 ~ 64991018 (-)
LOC110524334 LOC106613806 coding downstream 27869 64939266 ~ 64982684 (-)
LOC110524333 LOC106613805 coding downstream 63135 64929844 ~ 64947418 (-)
LOC110524332 LOC106613803 coding downstream 99357 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 coding downstream 199889 64701867 ~ 64810664 (-)
LOC110524336 chaf1a coding upstream 41 65011639 ~ 65022842 (-)
LOC110524339 LOC106613811 coding upstream 18881 65030479 ~ 65051482 (-)
LOC110524344 stap2 coding upstream 48568 65060166 ~ 65083747 (-)
LOC110524345 sh3gl1 coding upstream 79582 65091180 ~ 65109379 (-)
rorca rorc1 coding upstream 110226 65121824 ~ 65137960 (-)
G427906 NA non-coding downstream 13437 64994105 ~ 64997116 (-)
G427910 NA non-coding downstream 82334 64927772 ~ 64928219 (-)
G427909 NA non-coding downstream 83807 64926270 ~ 64926746 (-)
G427386 NA non-coding downstream 230413 64779875 ~ 64780140 (-)
G427950 NA non-coding upstream 72661 65084259 ~ 65085437 (-)
sema6bb LOC106613817 non-coding upstream 170310 65181687 ~ 65333174 (-)
G428035 NA non-coding upstream 210799 65222397 ~ 65222600 (-)
G428048 NA non-coding upstream 240344 65251942 ~ 65252280 (-)
G428058 NA non-coding upstream 251555 65263153 ~ 65263382 (-)
G427287 NA other downstream 442173 64566681 ~ 64568380 (-)
LOC110522986 LOC106613472 other downstream 724194 64283744 ~ 64297376 (-)
G425810 LOC106613766 other downstream 1707159 63300924 ~ 63303394 (-)
G428132 NA other upstream 358518 65370116 ~ 65382590 (-)
LOC110524398 LOC106613863 other upstream 1775453 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 2799007 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 3328606 68331871 ~ 68352828 (-)
G432310 LOC106613894 other upstream 3688223 68699821 ~ 68707448 (-)

Expression


Co-expression Network