G427793


Basic Information

Item Value
gene id G427793
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65515489 ~ 65517669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU484584
tgggaaaagtatgtgaacccttggatttaataactggttgaccatgctttggcagcaataacctcaaccaaacgttttctgtagctGCGGATCGGACCTGCACAACGGGTCAGGAGGAATTCTGGACCATTCCGCCTtataaaactgtttcagttcagcaaattcttgggatgtctggtgtgaattgctcgaggtcatgccacagcatctcaattgggttgaggtcaggactccagaaggcgtattttcttctgttgaagccattcggTTGTTGATTTACTTGTGTTTTGGGTCGTCGTCATGTTGCATCACCCAAAttatgttgagcttcaattggcagacagcctAACAGTCTCCTGAAAAATGTCTTGATACacttgggaattaatttttccATTAATGATAGCAAGcagtccaggccctgaggcagcaaagtagccccaaaccatgatgctccctccaccaaactttaccgttGGGATGAgattttgatgttggtgtgctgtgacTTTCCTTCtccagtgttgtgtgttccttccaaacaactcaactgtagtttcatctgtccacagaatattttcccagtagtgctgtggaacatccaggtgcactttggcaaacttcagactagcagcaatgttttttttggacagcagtggcttcttctgtgttGTCCTCCCATGAataccattcttgtttagtgttttatgtatcatagacttgtcaacagagacattaacatgttccagagatttctgtaagtcatTAGCTGacacactaggattcttcttaacctcattgctcttgcagtcatctttgcaggacagacactcctagggagagtagcaagtgctgaactttctccatttatagactatttgtcttaccgtggaccaATGAACATCAAgtcttttagagatacttttgtaaccctttccagctttatgtaaGTCAACAATTCCATTTCTTTTGTtggaggcatggttcacatcaggcaattaTTTTTGTGAATAGTAAACTCAAATGTTGTTATTGTTTTTTATATGGCAAGGCAGCTCTAAGCAACTTCTCCAATCtcattggactccaggttagctgactcctgactccaggttagctgactcctgactccaggttagctgactcctggttagctgactcctgactccaggttagctgactcctgactccaggttagctgactcctgactccaggttagctgactcctgactccaggttagctgactcctgactccaggtcagctgactccaggtcagctgactccTGACAATTAGCTTTTGAAGAAGTCATtcgcctaggggttcacatactttttctaaccTACAGTGTAAATGTTTAAAttaatgtattcaatatagacaaactaataacacacattgTTGTTTTTCTTAAGCactttgtctattgttgtgacctagataaagatcagatcaaatttgatgaccaatttatgcagaaaaccagataattccaaagggttcacagtttttcttgccactgtatattgtattgtCTTGACAATATCGCATTCATTTTGCGCtggttggctgtacctgcacgaAAATTCCAGTagttttccttcatagcttgttctccaaatgtttttcagcacttttatttcaatgactgatcaaaactcgtttGCGCATGGGTCTCTCgcctctctgcagcagacatgagCCATATGTTTGGGACATCAAatctcaataaaaaaaaatcacagtatcaaatcacaatacatatagaatcacaatacatatcggGCCCTAAGTATCTGTGATAATTTCGTATCGTGAGTTCCCCCAGCCCTATTGAATAGGCTTTGTAATTCATGACGCCTCAGGTGCAATTCTGATATTCAACCACCAGATGGCACAAAGCATCAGTCTGGACCAGAAGGTGTCTACACTCCACATGTATAAACTGCACCATGGCTTTGGGAACAGTACCAGAGGAAAATCTACTGACTCTTCAATCCAACAGTGATGTCAGCATGAAACGACTTTCCTTACTCTGTTAACCACATACCACCTTCGAGTCACACAGACACCAGTGGTTaaaagtacttaagtagaaatactttaaagtactacttaagtaggttTTTGGTATCCGTACTttcctatttatattttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU484584 True 2159 lncRNA 0.41 2 65515489 65517669

Neighbor

gene id symbol gene type direction distance location
LOC110524352 NA coding upstream 50808 65460577 ~ 65464681 (+)
abhd17ab LOC106613821 coding upstream 119313 65388061 ~ 65396176 (+)
zgc:77486 LOC106613819 coding upstream 132876 65367186 ~ 65382613 (+)
plin3 LOC106613818 coding upstream 148624 65356112 ~ 65366865 (+)
LOC110522880 NA coding upstream 338128 65175178 ~ 65177361 (+)
npl npl coding downstream 53759 65571428 ~ 65581138 (+)
LOC110524356 LOC106613828 coding downstream 63753 65581422 ~ 65587007 (+)
sec22bb LOC106613829 coding downstream 69467 65587136 ~ 65590748 (+)
notch2 LOC106613830 coding downstream 86450 65604119 ~ 65661449 (+)
slc35a3a LOC106613831 coding downstream 144293 65661962 ~ 65677841 (+)
G427744 NA non-coding upstream 62848 65451281 ~ 65452641 (+)
G427736 NA non-coding upstream 79195 65435451 ~ 65436294 (+)
G427698 NA non-coding upstream 165513 65349497 ~ 65349976 (+)
G427687 NA non-coding upstream 182533 65332162 ~ 65332956 (+)
G427659 NA non-coding upstream 216018 65299264 ~ 65299471 (+)
G427829 NA non-coding downstream 78105 65595774 ~ 65596022 (+)
G427838 NA non-coding downstream 88841 65606510 ~ 65643082 (+)
G427859 NA non-coding downstream 136007 65653676 ~ 65654077 (+)
G427860 NA non-coding downstream 139102 65656771 ~ 65657094 (+)
LOC110524338 LOC106584398 other upstream 486787 65024444 ~ 65028828 (+)
G427476 NA other upstream 518351 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1270960 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1336103 64177028 ~ 64183138 (+)
nfil3-4 LOC106614010 other upstream 1831250 63676409 ~ 63684848 (+)
G428696 NA other downstream 624410 66142079 ~ 66142605 (+)
G429156 NA other downstream 1464280 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1943060 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 2585510 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2695047 68212224 ~ 68214236 (+)

Expression


Co-expression Network