G428393


Basic Information

Item Value
gene id G428393
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65788373 ~ 65798494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU485259
tggcactgtgatagactgcatccagtttgctgagtagagtattggaacctattttgtaaatgacatcgccgaattcGAGGATCGGTAGCATAgtcagttttacaagggtatgtttggcagcatgagtgaaggatgctttgttgcgaaataggaagccaattctagatttaactttggaatggagatgtttgatatgggtctggaaggagagtttacagtctaaccagacacctaagtatttgtagttgtccacgtattctaagtcagagccgtccagagtagtgatgttggacaggcgggtaggtgc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485259 True 307 lncRNA 0.44 2 65788373 65798494

Neighbor

gene id symbol gene type direction distance location
foxd2 LOC106613833 coding upstream 72506 65713466 ~ 65715867 (+)
foxe3 LOC106614014 coding upstream 82944 65703567 ~ 65705429 (+)
slc35a3a LOC106613831 coding upstream 110532 65661962 ~ 65677841 (+)
notch2 LOC106613830 coding upstream 126924 65604119 ~ 65661449 (+)
sec22bb LOC106613829 coding upstream 197625 65587136 ~ 65590748 (+)
znf692 LOC107695246 coding downstream 255470 66053964 ~ 66058160 (+)
fcho1 LOC106613838 coding downstream 260600 66059094 ~ 66106566 (+)
acsbg2 LOC106613839 coding downstream 385169 66183663 ~ 66210856 (+)
LOC118964639 NA coding downstream 442046 66240540 ~ 66248348 (+)
LOC110524376 LOC106613845 coding downstream 542087 66340581 ~ 66349235 (+)
G428388 NA non-coding upstream 3813 65784305 ~ 65784560 (+)
G428385 NA non-coding upstream 5715 65782447 ~ 65782658 (+)
G428382 NA non-coding upstream 8088 65779973 ~ 65780285 (+)
G428379 NA non-coding upstream 18100 65769859 ~ 65770273 (+)
G428375 NA non-coding upstream 25437 65762686 ~ 65762936 (+)
G428420 NA non-coding downstream 27544 65826038 ~ 65826288 (+)
G428449 NA non-coding downstream 52131 65850625 ~ 65850861 (+)
G428570 NA non-coding downstream 172956 65971450 ~ 65971682 (+)
G428576 NA non-coding downstream 184757 65983251 ~ 66034123 (+)
G428578 NA non-coding downstream 226659 66025153 ~ 66028568 (+)
G427747 NA other upstream 266993 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 759671 65024444 ~ 65028828 (+)
G427476 NA other upstream 791235 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1543844 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1608987 64177028 ~ 64183138 (+)
G428696 NA other downstream 343585 66142079 ~ 66142605 (+)
G429156 NA other downstream 1183455 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1662235 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 2304685 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2414222 68212224 ~ 68214236 (+)

Expression


Co-expression Network