G428576


Basic Information

Item Value
gene id G428576
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65983251 ~ 66034123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU485486
gtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtgctaaactatacagaattgtataaagaaggtcataccaatgatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggataattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaatggtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattatgCTAAAcaatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattttactaaactatacagaattgtttaaagaaggtcataccatggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactattcagaattgtataaagaaggtcataccaaggatcatttttctgtttgaaatagtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattatactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaattatacagaattgtataaagaaagtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaa
>TU485460
gtataaagaaggtcataccaaggataattttgctcTTTGAAAttatactaaactatacagaattgtttaaagaaggtcataccaaggatcatttagctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatatagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtagtaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcattccgaggatcattttgctgtttgaaattgtactgaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattatactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgatgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcatacaaggataattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattt
>TU485498
gtataaagaaggtcataccaaggataattttgctcTTTGAAAttatactaaactatacagaattgtttaaagaaggtcataccaaggatcatttagctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatatagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagcattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagcattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggataattttgctgtttgaaattgtactaaactatacataattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagcattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagcattgtataaagaaggtcataccatggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggataattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggccataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggataattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactataccgaattgtttaaagaaggtcatacaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacataattgtataaagaaggtcataccaaggatcattttgctgtt
>TU485502
aactatacagcattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcattcCGAGGATctttttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaatgatcattttgctgtttgaaattgtactaaactatacagcattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagcattgtataaagaaggtcataccatggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgatgtttcaaattgtactaaactatac
>TU485493
aaattgtgctaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctg
>TU485479
actaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcattccgaggatcattttgctgtttgaaattgtactgaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctg
>TU485492
actaaactatacagcattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcatacaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcatactaaggatcattttgctgtttgaaattgtactaaactatacagcattgtataaggaaggtcataccaaggatcattttgatgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgatgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtgctaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485486 False 1159 lncRNA 0.29 3 65983251 66034123
TU485460 False 1373 lncRNA 0.29 2 65996084 66027970
TU485498 False 1508 lncRNA 0.30 4 65996084 66011478
TU485502 False 520 lncRNA 0.30 2 66001062 66008557
TU485493 False 316 lncRNA 0.31 2 66012566 66030470
TU485479 False 309 lncRNA 0.31 3 66023831 66030470
TU485492 True 948 lncRNA 0.30 2 66025941 66030470

Neighbor

gene id symbol gene type direction distance location
foxd2 LOC106613833 coding upstream 267384 65713466 ~ 65715867 (+)
foxe3 LOC106614014 coding upstream 277822 65703567 ~ 65705429 (+)
slc35a3a LOC106613831 coding upstream 305410 65661962 ~ 65677841 (+)
notch2 LOC106613830 coding upstream 321802 65604119 ~ 65661449 (+)
sec22bb LOC106613829 coding upstream 392503 65587136 ~ 65590748 (+)
znf692 LOC107695246 coding downstream 19841 66053964 ~ 66058160 (+)
fcho1 LOC106613838 coding downstream 24971 66059094 ~ 66106566 (+)
acsbg2 LOC106613839 coding downstream 149540 66183663 ~ 66210856 (+)
LOC118964639 NA coding downstream 206417 66240540 ~ 66248348 (+)
LOC110524376 LOC106613845 coding downstream 306458 66340581 ~ 66349235 (+)
G428570 NA non-coding upstream 11569 65971450 ~ 65971682 (+)
G428449 NA non-coding upstream 132390 65850625 ~ 65850861 (+)
G428420 NA non-coding upstream 156963 65826038 ~ 65826288 (+)
G428393 NA non-coding upstream 184757 65788373 ~ 65798494 (+)
G428388 NA non-coding upstream 198691 65784305 ~ 65784560 (+)
G428625 NA non-coding downstream 10404 66044527 ~ 66045201 (+)
G428626 NA non-coding downstream 17050 66051173 ~ 66051372 (+)
G428637 NA non-coding downstream 73010 66107133 ~ 66108885 (+)
G428669 NA non-coding downstream 76115 66110238 ~ 66110481 (+)
G427747 NA other upstream 461871 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 954549 65024444 ~ 65028828 (+)
G427476 NA other upstream 986113 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1738722 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1803865 64177028 ~ 64183138 (+)
G428696 NA other downstream 107956 66142079 ~ 66142605 (+)
G429156 NA other downstream 947826 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1426606 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 2069056 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2178593 68212224 ~ 68214236 (+)

Expression


Co-expression Network