G428625


Basic Information

Item Value
gene id G428625
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66044527 ~ 66045201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU485561
TCTTTCTCCATCTTTAAATGTTTTGTGATCATAATAAATTAATTCAAACATGATAAAGTGATCCAAAGTTCACAAATGTATCATTTAATGTCATGTTTCAGACATTGGAAATTGTATTTTTATGATGTACTCTATTCGGTTGTTTGTTATGTTACTAGATGTCGATGAGGTATTCAGATGGTAACTATTTTTCTTGGTAAGCTTATTCTAAACCATTTATCTCACTCTGTTCCCACACTTCTGTTCATTGTCACAAATACAtggttatacactgagtgtaccaaacattaggaacaccttcctaattttgagttgcacccccttttgcccttaaGAACATtccaattcgttggggcatggattcaacaaggtgtcgaaagcgttccacagggatgctggcccatgttgactccaatgcttcccacaaaaGTGTTGAGTTGGcggaatgtcctttgggtggtggaccattcttgatacacatgggaaactgttgagaatGAAAATCTCAGCAGCGTTGCAGCTCTTGACACACAGACACCTGGCACCTTCTATCATAccacattcaaaggcacttaagttaatccaccctttgaatggcacatatacacaacccatgtctcaattaACTaaaggcttgaaaatccttctcTAATAAAAGTCTaagccatggggggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485561 True 675 lncRNA 0.39 1 66044527 66045201

Neighbor

gene id symbol gene type direction distance location
foxd2 LOC106613833 coding upstream 328660 65713466 ~ 65715867 (+)
foxe3 LOC106614014 coding upstream 339098 65703567 ~ 65705429 (+)
slc35a3a LOC106613831 coding upstream 366686 65661962 ~ 65677841 (+)
notch2 LOC106613830 coding upstream 383078 65604119 ~ 65661449 (+)
sec22bb LOC106613829 coding upstream 453779 65587136 ~ 65590748 (+)
znf692 LOC107695246 coding downstream 8763 66053964 ~ 66058160 (+)
fcho1 LOC106613838 coding downstream 13893 66059094 ~ 66106566 (+)
acsbg2 LOC106613839 coding downstream 138462 66183663 ~ 66210856 (+)
LOC118964639 NA coding downstream 195339 66240540 ~ 66248348 (+)
LOC110524376 LOC106613845 coding downstream 295380 66340581 ~ 66349235 (+)
G428576 NA non-coding upstream 10404 65983251 ~ 66034123 (+)
G428578 NA non-coding upstream 15959 66025153 ~ 66028568 (+)
G428570 NA non-coding upstream 72845 65971450 ~ 65971682 (+)
G428449 NA non-coding upstream 193666 65850625 ~ 65850861 (+)
G428420 NA non-coding upstream 218239 65826038 ~ 65826288 (+)
G428626 NA non-coding downstream 5972 66051173 ~ 66051372 (+)
G428637 NA non-coding downstream 61932 66107133 ~ 66108885 (+)
G428669 NA non-coding downstream 65037 66110238 ~ 66110481 (+)
G428670 NA non-coding downstream 65786 66110987 ~ 66111208 (+)
G427747 NA other upstream 523147 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 1015825 65024444 ~ 65028828 (+)
G427476 NA other upstream 1047389 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1799998 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1865141 64177028 ~ 64183138 (+)
G428696 NA other downstream 96878 66142079 ~ 66142605 (+)
G429156 NA other downstream 936748 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1415528 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 2057978 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2167515 68212224 ~ 68214236 (+)

Expression


Co-expression Network