G428637


Basic Information

Item Value
gene id G428637
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66107133 ~ 66108885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU485594
ACTCAAGCTCAGGATTCTTATAGCTACTACAAAATCTGAGGGGGAACTCAACCAAAAGTGTTTAGAGAAACGCTCCATGTCGGTTGTAATTTCCGGTTGAGCAGACAAAATACACCGTTTACCGCGAATGCAAAAACATTTCAATCACACCATTACTGATTGACTCCAGCCCTAAATCAGCTATAATTTTTTATAAATAGAAATGGAGATTCTCTCAATATGGAAAAGTGACTGCCGATTTATAGGGCATTTACACCCCAAATATCAACGTTGTTTGTTAACTATTGATGTGTTGACCAGATGACACAAATTATCAAAAGAAGACAAACGTTTGCCTCACATCAGTCCCAGCCACTAAATAATCAAAGCAAGGAGGACATCCCCCTTTAAAAACACAAACAGTGCAGTATGGGGAGAGCTAAATGATTGGGGAAAGACCAAGCGATACAAAAGGCCATTGATGAACACAGATTTTTTACATCATATTAAGAAAGTTATATTTTAAAGTTTAACAGTTTGTTGGTTTTGCACAAATCAGCCCTCCTACAGTATCATTGTACGGCTATATAATAAAATCTTAGAGCAACAGACTCAAAAGCTATTAGCATTTTCATATCAAGCAATATGAATGAATAAACATGGATTGGGAGATTCTGAATATTTCCTTCCAATCAATATAGAATGAGTCCATTTGAGTAACGGTAAGGGGAGAGCCTATCTGAACTCAAACAGCATCAGTTGAACTGAACAGATGCAACTACAGTTTCCTTTTAAGGGTTTTGGCTTCGGGGGTCCAATGCTCTTTCACGTTTTGTTAAATACATACTATTTTACATCCCTTAAGAAATTTGACTTGACCCAGACATACAGCTCCACAAAATGGATGCCAGACACCTCCAGTTAACCAAGAAGGTAGATCATATATATGTACAATCTGGTGGTTTCCTGAACACATTCCACCACACTCCTTTCAGTCTTTAAAACATATCTAAATGTCTCATCAACATAAGAGGCAACTGGCTTGTCCTAGACTCTGGGGCGTGACATCTAGAAACACCCTGAAGTTCTACAGTCATGGATCAATGAGACTTGTGTGCATCCTGAAATTGAGTTTCTGCCAAACGGCATCATAGAATCGTTATCATTTGAATGAAAAGTGATATATACATGGAAAAGGTTACTTGAGTAAGGGGGAGTTGGTAGAATTAACAGTAAGTGGCTCTTTTATAGTTGCCTCataagaacagaacagagcatagAAAAGGATGAGGTAACTAATCATCTCATATGGCCAGAGTGTTAAGAGGTCCCTGCCTTCCAATCAACTATGAGACTAGGGGCCTACTGACATTCCCACCAGCGTGGCCACTCTTGGGTGAGGGACAAGTCCTTTGCGTCAGTGGGTTGCATCAATGTGGGTTGAGCTGCCAGTAGCAACAGAGGCAACATGTATAGTATACTCCTACAGGTTTAAAGGTGCTTTAGAATGTCTGAGGTTCTGAAACAATACATTCATACTGCGGTAGAGGCACAGCTGAGGGAGGAGATAGACATCTGTAGTAGTGGCGGTTAAAGAGTTATCTAAGGCACTGGAATTACACAGCTAATAAAGGATAAGATACACACAGCACTCATTCAAAGTTACACGTATCCAACATCGGTACTGCACAAAGTCATCCTGAATCACAGTTGCAAAACGGGAACAAGTGAACGGAGAGAAATTAGAACTGTATACCCCTGTCAGGTCAAACCA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU485594 True 1753 lncRNA 0.40 1 66107133 66108885

Neighbor

gene id symbol gene type direction distance location
fcho1 LOC106613838 coding upstream 567 66059094 ~ 66106566 (+)
znf692 LOC107695246 coding upstream 48973 66053964 ~ 66058160 (+)
foxd2 LOC106613833 coding upstream 391266 65713466 ~ 65715867 (+)
foxe3 LOC106614014 coding upstream 401704 65703567 ~ 65705429 (+)
slc35a3a LOC106613831 coding upstream 429292 65661962 ~ 65677841 (+)
acsbg2 LOC106613839 coding downstream 74778 66183663 ~ 66210856 (+)
LOC118964639 NA coding downstream 131655 66240540 ~ 66248348 (+)
LOC110524376 LOC106613845 coding downstream 231696 66340581 ~ 66349235 (+)
mob3a LOC106613847 coding downstream 240688 66349573 ~ 66355573 (+)
mknk2b LOC106613848 coding downstream 256634 66365519 ~ 66383789 (+)
G428626 NA non-coding upstream 55761 66051173 ~ 66051372 (+)
G428625 NA non-coding upstream 61932 66044527 ~ 66045201 (+)
G428576 NA non-coding upstream 73010 65983251 ~ 66034123 (+)
G428578 NA non-coding upstream 78565 66025153 ~ 66028568 (+)
G428669 NA non-coding downstream 1353 66110238 ~ 66110481 (+)
G428670 NA non-coding downstream 2102 66110987 ~ 66111208 (+)
G428671 NA non-coding downstream 2803 66111688 ~ 66111982 (+)
G428673 NA non-coding downstream 4939 66113824 ~ 66114409 (+)
G428675 NA non-coding downstream 7208 66116093 ~ 66116308 (+)
G427747 NA other upstream 585753 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 1078431 65024444 ~ 65028828 (+)
G427476 NA other upstream 1109995 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1862604 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1927747 64177028 ~ 64183138 (+)
G428696 NA other downstream 33194 66142079 ~ 66142605 (+)
G429156 NA other downstream 873064 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1351844 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 1994294 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2103831 68212224 ~ 68214236 (+)

Expression


Co-expression Network