G428686


Basic Information

Item Value
gene id G428686
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66128656 ~ 66129472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU485644
CTTGTGCCGAGGCGGCGGGTCCTGAGGCCCATGAAGACGGAGCGGATGAGTTTCCCAAAGGAGGCAGCGTTGACCGGGTCCAGTTTCTGCTCCTGACAGTGGCGCAGGTAGTGGTTGTAGAGGGAGCTCCGGGGCAGGCTCACCCCCTCTGCTGTCTCATAGTTATCCAGCAGCCACTGCAgctaaaacacacacagcacagaaacagtcagtcagtcacacctaCTGGGCCCTGTCTGCTGCACTCTGATCCTTACTGTACAACTCCATCCTAAGGTTGAAAGGCTAGAACCCGGTTACTGAGATTTACCACCCAAAACCACTCCTTCCTccccccaggtacacacacacacactggtgcatgcacacacaggtaCACGCCAACCACCTGAGAATTTAGAGGATGTGTTAAAACTGTCAAAGGGAGTGAATTGGTATatttgaggtacacacacacaaacaaaccaccTGTTTAGTGAGTTTAAAGGAGAGAATTTAGATTGAGTTAAAACTGTCAAAGGGAGTGAATTGGTATATTTGAGGTATAGCAGGTACACACAGTTACACGATAGCACGCACACaatagtgtaacagtataactttagaccgtcccctcgcccatacccgggcgcaaaccagggaccctctgcacacaactgacacccacgaagcatcgttacccatcgctccacaaaagccgcggcccttgcagagcaagggtaacaactacttcaaggtctgagcaagtgacgtcaccaattgaaacgctatttagcgcgcaccaccgctaactaagctagcagtttcacatctgtta

Function

NR:

description
hypothetical protein cypCar_00048780, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485644 True 817 lncRNA 0.51 1 66128656 66129472

Neighbor

gene id symbol gene type direction distance location
fcho1 LOC106613838 coding upstream 22090 66059094 ~ 66106566 (+)
znf692 LOC107695246 coding upstream 70496 66053964 ~ 66058160 (+)
foxd2 LOC106613833 coding upstream 412789 65713466 ~ 65715867 (+)
foxe3 LOC106614014 coding upstream 423227 65703567 ~ 65705429 (+)
slc35a3a LOC106613831 coding upstream 450815 65661962 ~ 65677841 (+)
acsbg2 LOC106613839 coding downstream 54191 66183663 ~ 66210856 (+)
LOC118964639 NA coding downstream 111068 66240540 ~ 66248348 (+)
LOC110524376 LOC106613845 coding downstream 211109 66340581 ~ 66349235 (+)
mob3a LOC106613847 coding downstream 220101 66349573 ~ 66355573 (+)
mknk2b LOC106613848 coding downstream 236047 66365519 ~ 66383789 (+)
G428683 NA non-coding upstream 3056 66125348 ~ 66125600 (+)
G428682 NA non-coding upstream 3998 66124377 ~ 66124658 (+)
G428676 NA non-coding upstream 8494 66118475 ~ 66120162 (+)
G428675 NA non-coding upstream 12348 66116093 ~ 66116308 (+)
G428673 NA non-coding upstream 14247 66113824 ~ 66114409 (+)
G428688 LOC106613840 non-coding downstream 2334 66131806 ~ 66132067 (+)
G428689 NA non-coding downstream 2968 66132440 ~ 66132655 (+)
G428690 NA non-coding downstream 4584 66134056 ~ 66134278 (+)
G428693 NA non-coding downstream 9353 66138825 ~ 66139279 (+)
G428695 NA non-coding downstream 12162 66141634 ~ 66141927 (+)
G427747 NA other upstream 607276 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 1099954 65024444 ~ 65028828 (+)
G427476 NA other upstream 1131518 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1884127 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1949270 64177028 ~ 64183138 (+)
G428696 NA other downstream 12607 66142079 ~ 66142605 (+)
G429156 NA other downstream 852477 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1331257 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 1973707 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2083244 68212224 ~ 68214236 (+)

Expression


Co-expression Network