G429348



Basic Information


Item Value
gene id G429348
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66365438 ~ 66366434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU486354
TGAAAGAGCTATGGAATCCAGTGACTTCGCTGATCATATTTTGCACCATTTTGCTTTGATTATGGGGGACTGATGGCGACTGCAGCGTTGTGGTATCAAATTACACTCTCCCAAAACAAAACGTTTCTTTTAGAGAGAATGCAGCAAATTATCGCTGTGCTGTCTGGTCAAGATGATGCGCTTTCAACCAGACGGGAGCACCGTTTTCGCTTTTCACAGCTCCAGTGTTAAAGCCGCTATTTGACCCACTGCTTTCATCAAAGCTGCAGAGATGGTCGAGGGGAAGGAAGCCAGATCGTGAGTGTGTGGAAGATGGAACGAAGTGCATCCGACAAGGCTTTTTAATCTCACGACTGTTTCCGCCCACTTCTCGGTTCCTCCAGCCCCTTCGGCTACTCGCACCCAAAACACAACAACAGACGGTTGGTTCATCACATG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU486354 True 438 lncRNA 0.48 2 66365438 66366434

Neighbor


gene id symbol gene type direction distance location
adamts10 LOC106613844 coding downstream 30093 66281727 ~ 66335345 (-)
myo1f LOC100380684 coding downstream 81983 66253710 ~ 66283455 (-)
acer1 acer1 coding downstream 116210 66244380 ~ 66249228 (-)
mllt1a LOC106613842 coding downstream 124300 66213497 ~ 66241138 (-)
rfx2 LOC106613840 coding downstream 190315 66106837 ~ 66175123 (-)
LOC118964532 LOC106614015 coding upstream 22589 66389023 ~ 66391922 (-)
LOC110524386 NA coding upstream 148039 66514473 ~ 66521372 (-)
LOC110524385 NA coding upstream 288057 66653328 ~ 66659138 (-)
LOC110524389 LOC106584359 coding upstream 300103 66666537 ~ 66676709 (-)
LOC110524390 LOC106613856 coding upstream 354328 66720762 ~ 66736749 (-)
G429342 NA non-coding downstream 7653 66357533 ~ 66357785 (-)
G429274 NA non-coding downstream 154584 66208978 ~ 66210854 (-)
G429255 NA non-coding downstream 188384 66176799 ~ 66177054 (-)
G429240 NA non-coding downstream 201754 66163445 ~ 66163684 (-)
G429247 NA non-coding downstream 229042 66136148 ~ 66136396 (-)
G429304 LOC106613848 non-coding upstream 13286 66379720 ~ 66383789 (-)
G429419 NA non-coding upstream 114870 66481304 ~ 66482287 (-)
G429395 NA non-coding upstream 123121 66489555 ~ 66489780 (-)
G429421 NA non-coding upstream 126998 66493432 ~ 66493633 (-)
G428132 NA other downstream 982848 65370116 ~ 65382590 (-)
G427902 ubxn6 other downstream 1353840 64999708 ~ 65011598 (-)
LOC110524332 LOC106613803 other downstream 1454440 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 other downstream 1632466 64701867 ~ 64810664 (-)
G427287 NA other downstream 1797058 64566681 ~ 64568380 (-)
LOC110524398 LOC106613863 other upstream 420617 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 1444171 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 1973770 68331871 ~ 68352828 (-)
G432310 LOC106613894 other upstream 2333387 68699821 ~ 68707448 (-)
G432338 NA other upstream 2383783 68748558 ~ 68755057 (-)

Expression



Co-expression Network