G429304 (LOC106613848)


Basic Information

Item Value
gene id G429304
gene name LOC106613848
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66379720 ~ 66383789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU486308
gtgGTTCAAAGCATTTTTATTGTATCTTTAGAAAAACACAAAATTCTCCAGTCAAATGTTGCTTTACGTGAACTGCAAAATCAGTCACATGGTACAGTAAAGTGCTTATTTAAAATCAATGTTTGTCTGATGTAATATGTACTTTCCAACATTTTTCCATCAATATTTTTGGGCTGGGAGAGGTTAAAAACAAGTATCAACAACACTCAAGAGAAGCCTCAAGGCTTGAGGATATCATAACCACATGGTAGAAAAACAAATCTACATGTTACCTCCCTCAAACTCAACTATTtataaaaatgtttatttaatttcAATGTGTTGAAATGCATTGCCGGTGGGCTACATTCAAATTGTGGGGAAGTGGATTATGACTGTCCAGTTgactttataaaaaaaaaaaaaaaggtattacaAAAAGCTAAAAATAAAATAGAGGCTAGGGATAGCTTGTATTCATTCTCTCCAAATAAAAAAGGCAGTCCTTAACTACTGCATTGGGTAAAAGTAGAAATGATTATGACGAAGGTAACTCATACCTTAGATATAATTAAGAGTACTACCAAAGTCTTTCTGCATTTCTGAGAATCCCAACCCTAacaaaacagagagaaacatattTGATACTTTGTTTTAAAGTAGAAACTGATTTGAATATGTATTTTCAAAACCCTAAAGACCCCCTTACTTAGCTTAATGCTTGTTCAGATTCTTGATAGCATGGTAGTTTCACAAACAAAGAACAGCTGTATACACAAATTCAAGTAAGTCTTACTATAAGACATAAAACCCCACAAAGATGCATTGGTAGAAGGTTTCTTTAAAAGATTACAATCAGTGTCCTATTATCAGCATAATGGGCCATATGACGTCAAGGGAGtcattattcccccccccccccaagagtaCCACACTGCGGTGCTGGCAACACCACATGGACATTCATAAGTTTAGTAGTTTTACTCCTTGAGAATGCATGCCCGTGTCATAAACCTGTGAGAAAcctcaggtaaaaaaaaaaaataatttaaaattgtTTTACCCTTTACCCTTACACTTTTACCCTCTTTGGTAAATGGCTACAGTGTCTTGAGACCATCACCATAAAATAAATTGTTCAAATTTCAGAAAGAGCCGAACTTGTTTCCAAGCAGATAGTTACCAACACTTCACATACAAAACAGTAAAAGCCTTCATTATTTTGCTCCAgatacaaataaatgtttcataaaaaaataaaaattcccCCATAAACACTTAATATCTAGTCTTCCACCTGAACACCACATGCAGgttgacattaaaaaaaaaaactacaatatCAGTGGCACATTTAAACATTGACATGGAGTTAAACAAAGTAAACTTTTTAAAAAAGAACTGATTAATTACAGCTACATGGCCTCAGAATAGTTATTTTCTTCGGAATGCTTTTCcattttgtataattttttaGACCAATAGTCTCCTTCACCATGTTTTATGCAAAGTTAGGATGCAGTTTAGAATCATTCTGAGAGGGTGTGTCACATTATAAAGGACAGTATCAGGTTACCCTCTTAACGGAAAAGCCTGATTGTCCTGAGATCAGGTTTCAAATCCAAATACAATAGCTAAGTCACAGCAGCCAAAATGTGCTTTTCTACCCCTGCTATGCTTGACAGGTTATGACAGCCATGGCATAAAATTATGTCACACTAACCAGCAGTCAAATTACTGAAGATGTATTAGATGTCATCAGACCATTTAGATGTACACAACTTGGCATGGGGAACCAAATTTGCCATTTTTAAGCGAGGGTAGCGTCAGGCAAACCCCTTTGAAATGTCAGCGGGGTATACAACTAAGCTGGATCaaggagttagccagctaacgtgGCTAAATGTTCAAAAATGACTTTTCTTTTTGAAAGAGAAGCTTGAAATGGGAAGTCtcattagctaggtttccatccaattggcaacagatttatGGAAATATTCTGACTCTTTGCATAAAAACAAATACACGCATTTTCCCAGAGATGGGTTTCCATCAAGTTGACCTGTTGAGGATAAAAATGCTGTacgtgatgacatagtgcacataaaaataacttttgcggttaaattcccatgtaccaaatTCAAGTTTCCATCACATTTGCAACTCTGATGGTTTTGTCAACAAAATAAAAATGGTGTTGTATTGCAAATATGCCCACTGGTCTTGATACATGTGCTCTAGTCAACAGCTTGCAGATAGAGTGCTGGTAGGATAGCCTACATGAGATTATGGATGAAATAGCCAGATGTGTCAAAAGCAGCCAAGCACCATCATCATGTttccagaataagaccctcaatattatTGGAAAGGAGCAATCAAATCACTGCATGATCTTTCTCCACCGTGTGAAGTTAATCCTAACttgtcatctgtagcctaataaactgcattctGTGATGAGTCGTAGTGGGCCGACCACAGCATATCgcatgactccaagtttactacAATatgttatatcaatatttgctcaTAAAAAGGCAATTGCGTCGCCATCTCCTCACATAATTAAATTGTACTGACAAATCTCACCTTGTCTATCATATTTTGTTTAAGCATTTGTTAAAGTTCAGACAAATTTGGCATTTCCATCAGGCCTGCTGTGACAGACAagccattaaaaaaataaaataaaaattgcatATAAAGTTAGGATGGAAACATGTTAGTGACTAAACCCTCAAAAAAACATTACGTTTAGCTTTCTTAAATGAAACAAGAAATCAAGTTATTTCTGATTTTTAATCCAAGTTAACTGGCTAATTTATTTGTCCTGCCTTGTAGGATACCTGTCTGGTATCAAATTAGTTACATGCACCAACAACTTTGGGTTGGTGCATGAAGTCTCTCTTGCAGAAGTAGGCGAAACAAATGGAATTCAACCCATATTGCATTGTAGAAATTCAGGAGGAATGAATGTTGAATGATGCATGGCCAGTGCTAGTTTGGCATAGTTCATTTCATCTATGAAACTGAATTGGTAGACATTGCAGCGTAATAAGGGCTGGTTATAGATACACATTCTCTGGTACTAGAGGCTCAAGTGCACAGCCACTGTTTTGTACTGTGGGCTTAAAACCTTCTAGAGAGGAGGCTCAGTTGAGGAATTTATCCATTAAGATAAAGCAAAATAATCTGAAAGCTTTGAAAGTCCCAGCCAAACAATGGACTACACCAGGACCTAACAGCATCCGCTTCCAGCATTCTGAACTCTACACTGAATCCCTCCACATCATCTTGGCTATTGCATAAGCATGTATGCATCTGCTGATGGGGCATTCatgcatacacatacatacaggcAAAGAGAACATTCCAGGTAAACTTAAGTCACAGTTGATCTAGTTATAACGTGAAAGCAGCACAACAGGTAGTCCTTTGGTGTCTGAGCTTGGTTCAAACCTTCTGCCTTAGACTTAACGAAATAAAAACAGAGCTTGAAGAGCTCTCCCATCCCATCGACCTCCCAGTCCCAGCAGGCTGGATGTGCATGCGTATGCATGCCCTGGCTGATGTGCTTTATAAGTGCTGCTGTGGGGCAGAAGGCAGTTAGGAAATAGACAGCAGGCATGGTAGCGGTCTCCTGTTAAAGATGGGGACATGCCTGCAGTCAGTGTGGCTGAAGAGCTGCGGTCAGGTAGAGGCCAGGCTGAGCGGTCGTCTAGAGATCTgagttgggggtggggggggacaaAGGTGGTTGTTTAGGCACATGTTGACGTGATGACGAGGGGGGTGAGGAGCTGACTGAGCTCGGAGGCAGAGACGGGCCCAGTCTTCAAGAGGCTGCCCCTCTGCCTGCGCTTGGCCAGCTTTGAGTTGGATGGAGGGGAGAGGCGCATGGAGGCGGAGCTGGCTGTGATGACCATGGGAGCCTCGTCAAGCTGCTCCTCCATCACAGCCTGCTCAGCCAATTGCCGGTTCATGGCCACCGCCTTGCCAGCAAAGAACGTCAG

Function

NR:

description
MAP kinase-interacting serine/threonine-protein kinase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU486308 True 4004 lncRNA 0.40 2 66379720 66383789

Neighbor

gene id symbol gene type direction distance location
adamts10 LOC106613844 coding downstream 44375 66281727 ~ 66335345 (-)
myo1f LOC100380684 coding downstream 96265 66253710 ~ 66283455 (-)
acer1 acer1 coding downstream 130492 66244380 ~ 66249228 (-)
mllt1a LOC106613842 coding downstream 138582 66213497 ~ 66241138 (-)
rfx2 LOC106613840 coding downstream 204597 66106837 ~ 66175123 (-)
LOC118964532 LOC106614015 coding upstream 5234 66389023 ~ 66391922 (-)
LOC110524386 NA coding upstream 130684 66514473 ~ 66521372 (-)
LOC110524385 NA coding upstream 270702 66653328 ~ 66659138 (-)
LOC110524389 LOC106584359 coding upstream 282748 66666537 ~ 66676709 (-)
LOC110524390 LOC106613856 coding upstream 336973 66720762 ~ 66736749 (-)
G429348 NA non-coding downstream 13286 66365438 ~ 66366434 (-)
G429342 NA non-coding downstream 21935 66357533 ~ 66357785 (-)
G429274 NA non-coding downstream 168866 66208978 ~ 66210854 (-)
G429255 NA non-coding downstream 202666 66176799 ~ 66177054 (-)
G429240 NA non-coding downstream 216036 66163445 ~ 66163684 (-)
G429419 NA non-coding upstream 97515 66481304 ~ 66482287 (-)
G429395 NA non-coding upstream 105766 66489555 ~ 66489780 (-)
G429421 NA non-coding upstream 109643 66493432 ~ 66493633 (-)
G429457 NA non-coding upstream 160004 66543793 ~ 66544061 (-)
G428132 NA other downstream 997130 65370116 ~ 65382590 (-)
G427902 ubxn6 other downstream 1368122 64999708 ~ 65011598 (-)
LOC110524332 LOC106613803 other downstream 1468722 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 other downstream 1646748 64701867 ~ 64810664 (-)
G427287 NA other downstream 1811340 64566681 ~ 64568380 (-)
LOC110524398 LOC106613863 other upstream 403262 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 1426816 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 1956415 68331871 ~ 68352828 (-)
G432310 LOC106613894 other upstream 2316032 68699821 ~ 68707448 (-)
G432338 NA other upstream 2366428 68748558 ~ 68755057 (-)

Expression


Co-expression Network