XLOC_023496


Basic Information

Item Value
gene id XLOC_023496
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 26354696 ~ 26369185 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047205
ATGGACTCATCAGAAGCTGCCAGAGGGAAGGAGAGTGTTCAGAAAAGATCTCCTCTAGATCTGATTATGAACCAGCTGCGAAGAAAAACTTCTTtcacagagagaaagaaaacatctgtaGGACGACTCTTCCGACCATCCGAGAGCAGCGACAGGAAAAATGGAGGAATACCTGAGATAAAGGAATCAGACCTCAGTGAAGGAAAAGAAAATAAGGAGCCCGAGAGAGAGAGCAGCATCACGGCTGAGGAGAGTGGCTCAGTTGTGGGCTGGGGTCGGGTCAAGCAGTTCATGCAGAAGCTCGGCAAAACTCCTCACAGTCACAGCCTGAGCCTGAGCCACTGTGATCTGACAGCCACAGATTTAGTGGAACTggCCACCCTGCTGCCGTTCATGTCTGAGCTGGAGCTGATGGAGCTGTCCTGGAATGATCTGCTCGGAGGCTCTCTGAAGGCTCTCACTGCACACCTGCAGCATGTGGAGAAGCTCAGAATGCTGAAGCTCTGCAGCTGTAGATTAGCACCGCAGGACCTGACTGCTCTCGGCGAGGCTCTCGACTGCATTCCTCTAATAGAGGTGCTAGATCTGTCCTGGAATGTTGGCATCGGCGCAGGAAATTTCAGACACTTCACAGAACAAATCCAACCTGAAAACAGACTGAAAGACCTCCGCCTGGTGGACTGCCAGCTCTCGGAGACAGACATTACAGCTCTGAGTAAAGCTCTTCCACTGTTGTCTGGTTTGGAAGAATTAGATTTGTCTAATAACAAGCTGTCAATAAAGGGAATGGAGAACCTCACCTCCTCCTTCAGCGCAACTCCAAGGCTGAAGACCTTAAAGCTGAGCATGTGTGGACTCGGTAAAGACCATCTCAGTGCCCTGGGCCAGGCGTTCAGGTTCATCACTGCACTAGAGCACATGGATCTATCGTGTAATAAGGAAGCAGGTGGAGGTCTCAGTACACTGGCTGCTAATCTACTTCTCCTCACACACTTGAGAAGTTTGGACATGCATCTGTGCTGTCTAACAAAGGACGATGTGCTGACTTTAGTCCAGGTAGCTCCATCTCTTAAAGAGCTCAGAGAGCTGGATTTATCATCCAACAAAAGTGTTGGAGACACACTCCAGAATCTTCTGCAAAGCCTTCCTCTTTCTCAAATGACCAAGCTTCCACTGAACAACTGTGACTTGAGTGATTCTGCATGCCAGGCTCTTGCTACCGTCATGCAGACGCTGAAACGGCTTGAAAGTTTGAATTTGTCTTGGAACAAATGTGTTGGGGAAAATCTGAGGGAGTTTCTGGAGCCCCTGCAGGCTGATTGCAAACTACAGGAACTCAGACTGAGCAGCTGTAATCTAACCACAGAAGATGTGCTACATCTAGAATCTGCCTGCCAGCGTGGAGCTCTTTCCCAGCTGAAGCTGCTGGATTTGTCCTACAATGGCAGTGTGGGAGATGGTGGTTGGACGTCTCTTTTTGGTAAAGCTGCTAGTCTGAAAGGCCTGGAGGAGCTGGATGTCAGCCTGCGTCCTTCCGCATCCCTCTCCGTCTCCCCCTGGCTGCCCGCCTTGTTGGAGGCTCTTCCACAGCTCACGTCCCTCAGCCGTCTGTCTCTGCAGCACTGGACTCTGAGCTCAGCTGAGAGAGACAAGCTGGAAAAAATTCTCAGCAAGAAAAGCGCCATCCTGGAATGTGACAGACTGAACACACCAACCCCAAAGGCAGCAGGTTAATGAGAAGCATTAGGCAATTATAGTTTTCCAAGTTACTGAAGTTGCAAATCAAGATGTTACTGAGAATGAGGTATTGATTAAAAGGCATTCTGATTTTTATATCACAAATTAACATTAATATTCTAGCATCAATATACAACATTAAAATGCAATgtaaagatgcagtaggtgattgtattcagataatttttgttgttgttgttgtgctggttgaagttcttttcacattccaatag
>TCONS_00047206
AGATCAGCCGAGAACTTCTTTGAAGGAACAATGGACTCATCAGAAGCTGCCAGAGGGAAGGAGAGTGTTCAGAAAAGATCTCCTCTAGATCTGATTATGAACCAGCTGCGAAGAAAAACTTCTTtcacagagagaaagaaaacatctgtaGGACGACTCTTCCGACCATCCGAGAGCAGCGACAGGAAAAATGGAGGAATACCTGAGATAAAGGAATCAGACCTCAGTGAAGGAAAAGAAAATAAGGAGCCCGAGAGAGAGAGCAGCATCACGGCTGAGGAGAGTGGCTCAGTTGTGGGCTGGGGTCGGGTCAAGCAGTTCATGCAGAAGCTCGGCAAAACTCCTCACAGTCACAGCCTGAGCCTGAGCCACTGTGATCTGACAGCCACAGATTTAGTGGAACTggCCACCCTGCTGCCGTTCATGTCTGAGTAAAGCTCTTCCACTGTTGTCTGGTTTGGAAGAATTAGATTTGTCTAATAACAAGCTGTCAATAAAGGGAATGGAGAACCTCACCTCCTCCTTCAGCGCAACTCCAAGGCTGAAGACCTTAAAGCTGAGCATGTGTGGACTCGGTAAAGACCATCTCAGTGCCCTGGGCCAGGCGTTCAGGTTCATCACTGCACTAGAGCACATGGATCTATCGTGTAATAAGGAAGCAGGTGGAGGTCTCAGTACACTGGCTGCTAATCTACTTCTCCTCACACACTTGAGAAGTTTGGACATGCATCTGTGCTGTCTAACAAAGGACGATGTGCTGACTTTAGTCCAGGTAGCTCCATCTCTTAAAGAGCTCAGAGAGCTGGATTTATCATCCAACAAAAGTGTTGGAGACACACTCCAGAATCTTCTGCAAAGCCTTCCTCTTTCTCAAATGACCAAGCTTCCACTGAACAACTGTGACTTGAGTGATTCTGCATGCCAGGCTCTTGCTACCGTCATGCAGACGCTGAAACGGCTTGAAAGTTTGAATTTGTCTTGGAACAAATGTGTTGGGGAAAATCTGAGGGAGTTTCTGGAGCCCCTGCAGGCTGATTGCAAACTACAGGAACTCAGACTGAGCAGCTGTAATCTAACCACAGAAGATGTGCTACATCTAGAATCTGCCTGCCAGCGTGGAGCTCTTTCCCAGCTGAAGCTGCTGGATTTGTCCTACAATGGCAGTGTGGGAGATGGTGGTTGGACGTCTCTTTTTGGTAAAGCTGCTAGTCTGAAAGGCCTGGAGGAGCTGGATGTCAGCCTGCGTCCTTCCGCATCCCTCTCCGTCTCCCCCTGGCTGCCCGCCTTGTTGGAGGCTCTTCCACAGCTCACGTCCCTCAGCCGTCTGTCTCTGCAGCACTGGACTCTGAGCTCAGCTGAGAGAGACAAGCTGGAAAAAATTCTCAGCAAGAAAAGCGCCATCCTGGAATGTGACAGACTGAACACACCAACCCCAAAGGCAGCAGGTTAATGAGAAGCATTAGGCAATTATAGTTTTCCAAGTTACTGAAGTTGCAAATCAAGATGTTACTGAGAATGAGGTATTGATTAAAAGGCATTCTGATTTTTATATCACAAATTAACATTAATATTCTAGCATCAATATACAACATTAAAATGCAATgtaaagatgcagtaggtgattgtattcagataatttttgttgttgttgttgtgctggttgaagttcttttcacattccaatag
>TCONS_00046478
ACAAACTTCCGGGATCCGGTGTGAATGAGATGAACGTGACAGGTGTAAATAGCGACTGAAATCACATAAAACCATCGCAAATTGATGAACGAGTGATATAGGAAAGATTCAAGACATATTTCAAGATCAGCCGAGAACTTCTTTGAAGGAACAATGGACTCATCAGAAGCTGCCAGAGGGAAGGAGAGTGTTCAGAAAAGATCTCCTCTAGATCTGATTATGAACCAGCTGCGAAGAAAAACTTCTTtcacagagagaaagaaaacatctgtaGGACGACTCTTCCGACCATCCGAGAGCAGCGACAGGAAAAATGGAGGAATACCTGAGATAAAGGAATCAGACCTCAGTGAAGGAAAAGAAAATAAGGAGCCCGAGAGAGAGAGCAGCATCACGGCTGAGGAGAGTGGCTCAGTTGTGGGCTGGGGTCGGGTCAAGCAGTTCATGCAGAAGCTCGGCAAAACTCCTCACAGTCACAGCCTGAGCCTGAGCCACTGTGATCTGACAGCCACAGATTTAGTGGAACTggCCACCCTGCTGCCGTTCATGTCTGAGCTGGAGCTGATGGAGCTGTCCTGGAATGATCTGCTCGGAGGCTCTCTGAAGGCTCTCACTGCACACCTGCAGCATGTGGAGAAGCTCAGAATGCTGAAGCTCTGCAGCTGTAGATTAGCACCGCAGGACCTGACTGCTCTCGGTAAAGCTCTTCCACTGTTGTCTGGTTTGGAAGAATTAGATTTGTCTAATAACAAGCTGTCAATAAAGGGAATGGAGAACCTCACCTCCTCCTTCAGCGCAACTCCAAGGCTGAAGACCTTAAAGCTGAGCATGTGTGGACTCGGTAAAGACCATCTCAGTGCCCTGGGCCAGGCGTTCAGGTTCATCACTGCACTAGAGCACATGGATCTATCGTGTAATAAGGAAGCAGGTGGAGGTCTCAGTACACTGGCTGCTAATCTACTTCTCCTCACACACTTGAGAAGTTTGGACATGCATCTGTGCTGTCTAACAAAGGACGATGTGCTGACTTTAGTCCAGGTAGCTCCATCTCTTAAAGAGCTCAGAGAGCTGGATTTATCATCCAACAAAAGTGTTGGAGACACACTCCAGAATCTTCTGCAAAGCCTTCCTCTTTCTCAAATGACCAAGCTTCCACTGAACAACTGTGACTTGAGTGATTCTGCATGCCAGGCTCTTGCTACCGTCATGCAGACGCTGAAACGGCTTGAAAGTTTGAATTTGTCTTGGAACAAATGTGTTGGGGAAAATCTGAGGGAGTTTCTGGAGCCCCTGCAGGCTGATTGCAAACTACAGGAACTCAGACTGAGCAGCTGTAATCTAACCACAGAAGATGTGCTACATCTAGAATCTGCCTGCCAGCGTGGAGCTCTTTCCCAGCTGAAGCTGCTGGATTTGTCCTACAATGGCAGTGTGGGAGATGGTGGTTGGACGTCTCTTTTTGGTAAAGCTGCTAGTCTGAAAGGCCTGGAGGAGCTGGATGTCAGCCTGCGTCCTTCCGCATCCCTCTCCGTCTCCCCCTGGCTGCCCGCCTTGTTGGAGGCTCTTCCACAGCTCACGTCCCTCAGCCGTCTGTCTCTGCAGCACTGGACTCTGAGCTCAGCTGAGAGAGACAAGCTGGAAAAAATTCTCAGCAAGAAAAGCGCCATCCTGGAATGTGACAGACTGAACACACCAACCCCAAAGGCAGCAGGTTAATGAGAAGCATTAGGCAATTATAGTTTTCCAAGTTACTGAAGTTGCAAATCAAGATGTTACTGAGAATGAGGTATTGATTAAAAGGCATTCTGATTTTTATATCACAAATTAACATTAATATTCTAGCATCAATATACAACATTAAAATGCAATgtaaagatgca
>TCONS_00047207
AACTTCCGGGATCCGGTGTGAATGAGATGAACGTGACAGGTGTAAATAGCGACTGAAATCACATAAAACCATCGCAAATTGATGAACGAGTGATATAGGAAAGATTCAAGACATATTTCAAGATCAGCCGAGAACTTCTTTGAAGGAACAATGGACTCATCAGAAGCTGCCAGAGGGAAGGAGAGTGTTCAGAAAAGATCTCCTCTAGATCTGATTATGAACCAGCTGCGAAGAAAAACTTCTTtcacagagagaaagaaaacatctgtaGGACGACTCTTCCGACCATCCGAGAGCAGCGACAGGAAAAATGGAGGAATACCTGAGATAAAGGAATCAGACCTCAGTGAAGGAAAAGAAAATAAGGAGCCCGAGAGAGAGAGCAGCATCACGGCTGAGGAGAGTGGCTCAGTTGTGGGCTGGGGTCGGGTCAAGCAGTTCATGCAGAAGCTCGGCAAAACTCCTCACAGTCACAGCCTGAGCCTGAGCCACTGTGATCTGACAGCCACAGATTTAGTGGAACTggCCACCCTGCTGCCGTTCATGTCTGAGCTGGAGCTGATGGAGCTGTCCTGGAATGATCTGCTCAGAGAGCTGGATTTATCATCCAACAAAAGTGTTGGAGACACACTCCAGAATCTTCTGCAAAGCCTTCCTCTTTCTCAAATGACCAAGCTTCCACTGAACAACTGTGACTTGAGTGATTCTGCATGCCAGGCTCTTGCTACCGTCATGCAGACGCTGAAACGGCTTGAAAGTTTGAATTTGTCTTGGAACAAATGTGTTGGGGAAAATCTGAGGGAGTTTCTGGAGCCC
>TCONS_00046479
AATTTCAGACACTTCACAGAACAAATCCAACCTGAAAACAGACTGAAAGACCTCCGCCTGGTGGACTGCCAGCTCTCGGAGACAGACATTACAGCTCTGAGTAAAGCTCTTCCACTGTTGTCTGGTTTGGAAGAATTAGATTTGTCTAATAACAAGCTGTCAATAAAGGGAATGGAGAACCTCACCTCCTCCTTCAGCGCAACTCCAAGGCTGAAGACCTTAAAGCTGAGCATGTGTGGACTCGGTAAAGACCATCTCAGTGCCCTGGGCCAGGCGTTCAGGTTCATCACTGCACTAGAGCACATGGATCTATCGTGTAATAAGGAAGCAGGTGGAGGTCTCAGTACACTGGCTGCTAATCTACTTCTCCTCACACACTTGAGAAGTTTGGACATGCATCTGTGCTGTCTAACAAAGGACGATGTGCTGACTTTAGTCCAGGTAGCTCCATCTCTTAAAGAGCTCAGAGAGCTGGATTTATCATCCAACAAAAGTGTTGGAGACACACTCCAGAATCTTCTGCAAAGCCTTCCTCTTT
>TCONS_00046480
AGATCAGCCGAGAACTTCTTTGAAGGAACAATGGACTCATCAGAAGCTGCCAGAGGGAAGGAGAGTGTTCAGAAAAGATCTCCTCTAGATCTGATTATGAACCAGCTGCGAAGAAAAACTTCTTtcacagagagaaagaaaacatctgtaGGACGACTCTTCCGACCATCCGAGAGCAGCGACAGGAAAAATGGAGGAATACCTGAGATAAAGGAATCAGACCTCAGTGAAGGAAAAGAAAATAAGGAGCCCGAGAGAGAGAGCAGCATCACGGCTGAGGAGAGTGGCTCAGTTGTGGGCTGGGGTCGGGTCAAGCAGTTCATGCAGAAGCTCGGCAAAACTCCTCACAGTCACAGCCTGAGCCTGAGCCACTGTGATCTGACAGCCACAGATTTAGTGGAACTggCCACCCTGCTGCCGTTCATGTCTGAGTAAAGCTCTTCCACTGTTGTCTGGTTTGGAAGAATTAGATTTGTCTAATAACAAGCTGTCAATAAAGGGAATGGAGAACCTCACCTCCTCCTTCAGCGCAACTCCAAGGCTGAAGACCTTAAAGCTGAGCATGTGTGGACTCGGTAAAGACCATCTCAGTGCCCTGGGCCAGGCGTTCAGGTTCATCACTGCACTAGAGCACATGGATCTATCGTGTAATAA

Function

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0051179 localization biological_process
GO:0033036 macromolecule localization biological_process
GO:0051641 cellular localization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-091204-286 Orthologous to human LRRC31 (leucine rich repeat containing 31).

Ensembl:

ensembl_id ENSDARG00000057392

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047205 False 1970 lncRNA 0.48 10 26354696 26368841
TCONS_00047206 False 1686 lncRNA 0.47 9 26354696 26368871
TCONS_00046478 False 1880 mRNA 0.48 10 26354768 26369185
TCONS_00047207 False 816 lncRNA 0.47 7 26358992 26369182
TCONS_00046479 False 538 processed_transcript 0.47 4 26359239 26362471
TCONS_00046480 True 654 nonsense_mediated_decay 0.49 6 26361746 26368871

Neighbor

gene id symbol gene type direction distance location
XLOC_023495 apodb coding downstream 25975 26306362 ~ 26328721 (-)
XLOC_023494 otos coding downstream 50310 26302781 ~ 26304386 (-)
XLOC_023493 cops9 coding downstream 52321 26284514 ~ 26302375 (-)
XLOC_023492 and1 coding downstream 71337 26277390 ~ 26283359 (-)
XLOC_023491 NA coding downstream 118118 26232700 ~ 26236578 (-)
XLOC_023497 skilb coding upstream 4156 26373341 ~ 26386982 (-)
XLOC_023498 zgc:194621 coding upstream 26020 26395205 ~ 26399623 (-)
XLOC_023499 slc7a14b coding upstream 77136 26446321 ~ 26460853 (-)
XLOC_023500 rpl22l1 coding upstream 105997 26475182 ~ 26479841 (-)
XLOC_023501 eif5a coding upstream 112115 26481300 ~ 26485345 (-)
XLOC_023665 dre-mir-735 misc upstream 11808776 38177961 ~ 38178027 (-)
XLOC_023490 NA non-coding downstream 322425 26031248 ~ 26032271 (-)
XLOC_023487 NA non-coding downstream 600550 25750636 ~ 25754146 (-)
XLOC_023471 NA non-coding downstream 1525295 24800776 ~ 24829401 (-)
XLOC_023468 NA non-coding downstream 1658939 24553793 ~ 24695757 (-)
XLOC_023503 NA non-coding upstream 272714 26641899 ~ 26648023 (-)
XLOC_023507 NA non-coding upstream 579527 26948712 ~ 26995164 (-)
XLOC_023517 NA non-coding upstream 1093751 27462936 ~ 27463524 (-)
XLOC_023518 NA non-coding upstream 1094376 27463561 ~ 27464451 (-)
XLOC_023520 NA non-coding upstream 1120630 27489815 ~ 27491197 (-)

Expression


Co-expression Network