G429580


Basic Information

Item Value
gene id G429580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66810013 ~ 66812758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU486621
TGCAGTACAGTTTATTAGTGAAGGTACCCAGGTTCAAACAGCATTTTGGTTGAGGTTGTTCAACTCTACATGTCTATAGGCCTACAGTACCATATAGCAGAGTCAATGTATGGTACATTACTTTCAAGGATCCAATCAACGGTTCTTTGATGACACAAAAACATATGGAAGCAGTGTGCCAATTATTTAATGTTTTAAAAAGTCATTGGGAAAAAAGCTAAATAGTCTAGTTGCAAATTAATCCCTGGGGATTtcttactgtacagtatattattaaaTCAGTATAACATTGTCTAAAAAAACACCATGCATCCAGATACTTCTTGAAAGGATGACACAGCACAGCAGCGTGACAAGCAGAGTTCCAGCACACACAGGCTCCACCAGAGACCCATCACCAAGTGGTATCTCCAAACTCACAGGATCCTGctcctaaaaataaataaacatttggaTAAGTGGATTCAAGTCATTTTCATATTCACAGTTGGTACGTTTTGAAACATTGTTATTGAAAATAAACAAGTTAGTTACTAAGTATGATAGTAATGATACATTCAACACTACATTGCATCACAtccgtccgtgattgggagtcccatagggtggcgcacaattggcccagcgtcgtccaggtttggccggggtaggtcttcattgtaaataagaattttttcttaactgacttacctagtaaaAAAAATGTGGACTCCAAACATCATTTAGCgttaccaaaacacacacacaaatgtatgcGGACAGCCcttaaaattagtggattcggctatttgccgttgctgactggtgtataaaatcgtgcacacagccatgcaatctccatagtaaAACATTGGCAGTAGTGGCCTTACTGAGGGAGCTCAGTAATTTTCAGCGTgggaccgtcataggatgccaatttttcaacaagtcagttcgtcaaatttctgccctgccagagctgccccggtgaactgtaagtgctgttattgttgtgtggcaacgtctaggagcaacaacggttcagccacgaagtggtaggccacacaagctcacagaacggaccaACGTTCTGTGAGCCGTAAAAATAGTGTGTCCTCGGTTGTAACAATTATTACAGAGTAAcaatgcctctggaagcaatgtcagcacaataatgaatagggtttccatggccgcacacaagcctaatgtCACCACGCTTGAACAGCTGGCTGTCGGGACAAACTAATTGAGGTTTGGCGGTTTacaggagaatgctacctaccCAAAtccataatgccaactgtaaagtttggtggagcaggaataatggtctggggcggtttttcatggttcggtctaggccccttagttccagtgaagggaaatattaccgctacagcatacaatgtcattcaagacgattctgtgcttccgactttgtggcaacagtttggggaaggccctttccggtttcagtatgacaatgcccccatgcacaaagcaaggtccatccagaaatggtttgttgagatcagtgtggaagaacttgactggcctgcacagagccctgacctcaaaccccatcgaacacctttgggatgaattggaacacaggtgattaggcctggctcgcagtcgaacATCAGTGCAAAAcctctaatgctcttgtggctgaatggaagcaagtccccgcatcaatgttccaatatctagtggaaagccttcccagaagagttgaggctgttatagcagcaacgggggggaccaactccatatgattttggagtgagatgttcgataagcagttgtccacatacttttggtcatgtagtgtatgcgACAATGTCATTGGCTGATAGATTTACCTGTAGATGTTGGATCTCAAGCCATTGGCATATGCTTAAGTTGTGGACAGTGCAGGGTGCGTCCACAATTTTGTAAGGAGGGAAGGAAATGAGCTGTGTAccttaaaacaaaataaaaactagTTATAATGGTAAAAACAAGCATATTTGCCATAAAATAAGTTGGTCCACTTCCAATAACCAAAGGTTAATGTTATTTACAGACACAGCATAATCTCCCTGAAGGAAATTGAGAAGTATGGTTATGCGTAAAAGGTATAAACACAATAACTCACATGTATCTGTCCTGAGTATTAGCTTTGGAAGTTTAATTTCAACAAGTTCAAATCTCTTCCCTGCAAGAGAGGGCTTGTGATAACGGCCATGGATAGGGAGTGTTGCTTTGAGAATTCCTTGGTCCAGAGCAGGATACACAAGAACAAGGAATTCCTCAGATGTGTGTGCTGGAGCCTCCAAGTCAACCGCTGAACCCAAAAGACCTGTAAACCAGTGTCCTCTTTCAGAGATGCAAGTTGGTATTGATCAATATAGATCCCACTGGGTAGTCTGTGAACAAGCAGAGCCTCGAGGCCATCTGGAAAACCAGGACCGAAGTCAACTGTGGTGACCAGGTCTCTAAAAACAGAGGGACCATACTTCCTAACattagaaacacttaaaaagtAAACAGCTTCTCAAGTCTCAAATGTGCGTCACCCAATTACAATTGTCAATTTACTTGCACGTGATAGGACCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU486621 True 2584 lncRNA 0.43 2 66810013 66812758

Neighbor

gene id symbol gene type direction distance location
cep19 cep19 coding downstream 8289 66799628 ~ 66801724 (-)
LOC110524398 LOC106613863 coding downstream 16018 66786837 ~ 66793995 (-)
LOC118964717 LOC106584253 coding downstream 45513 66752126 ~ 66764500 (-)
LOC110524390 LOC106613856 coding downstream 73264 66720762 ~ 66736749 (-)
LOC110524389 LOC106584359 coding downstream 133304 66666537 ~ 66676709 (-)
aqp12 LOC106613865 coding upstream 70931 66883689 ~ 66885402 (-)
ankmy1 ankmy1 coding upstream 242901 66978887 ~ 67068645 (-)
LOC118936331 dnajc19 coding upstream 698694 67511452 ~ 67513347 (-)
lrrc7 LOC106613881 coding upstream 997837 67810595 ~ 67983549 (-)
si:ch211-198n5.11 LOC106613885 coding upstream 1189327 68002085 ~ 68009594 (-)
G429583 NA non-coding downstream 24523 66784937 ~ 66785490 (-)
G429599 NA non-coding downstream 42117 66767693 ~ 66767896 (-)
G429593 NA non-coding downstream 48378 66761380 ~ 66761635 (-)
G429588 NA non-coding downstream 54671 66755125 ~ 66755342 (-)
G429574 NA non-coding downstream 61161 66744888 ~ 66748852 (-)
G429617 NA non-coding upstream 25418 66838176 ~ 66839233 (-)
G429620 NA non-coding upstream 69284 66882042 ~ 66882304 (-)
G430255 NA non-coding upstream 599139 67411897 ~ 67412183 (-)
G428132 NA other downstream 1427423 65370116 ~ 65382590 (-)
G427902 ubxn6 other downstream 1798415 64999708 ~ 65011598 (-)
LOC110524332 LOC106613803 other downstream 1899015 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 other downstream 2077041 64701867 ~ 64810664 (-)
bend5 LOC106584333 other upstream 1527446 68331871 ~ 68352828 (-)
G432310 LOC106613894 other upstream 1887063 68699821 ~ 68707448 (-)
G432338 NA other upstream 1937459 68748558 ~ 68755057 (-)
G432513 NA other upstream 2191861 69004619 ~ 69006106 (-)

Expression

G429580 Expression in all Baseline Samples

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G429580 Expression in each Bioproject

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G429580 Expression in each Sample
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Co-expression Network