G430260


Basic Information

Item Value
gene id G430260
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 67417730 ~ 67418494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU487331
taacctgttgaggatatggcagatatacgccccctttggagagattgggtacccctagtaaactggaaaaaaaatctttcaaaaattgttaatatatgcaaataaaaattattattggatagaaaacactctaaagattctaaaaccgttggaattatgtctgtaagtatagcagaactcacagggcaggcattcttccaaactagtttctgtggccatgaaagttggagcaactttgacgtcatgcccccacccctcccaaccagctatgattctggggacactttctatctcttccgctagatgtcctctttcattagagcttcaaaccgttcaaatcgcgcgagaattgaccctatgggagtgaaattagtgcgtgccacgagagaataggctgtgcgtcagggcgcgaattggtcacagtcattcctttgtttccagcactgaagagaagggcagacgatgggcgattgaattgaagtttgttttgcacgtctaaaacatcataaagcttgcttctgcacttagtttgacctgtttagtcgacatataatgtgtaattttgaagttttgatgcgcaacttatccggaccagaggacgttttgggtgcatttcagctgatgttattagcagtagctaatacaaagacgcaagacttgaaaccaaacgatgtattgggtaagtatgaagccttccagaacattctgaacgaagaccatcgaaggtaagggaatatttatgcttaaatctgtgtttctgttgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU487331 True 765 lncRNA 0.42 1 67417730 67418494

Neighbor

gene id symbol gene type direction distance location
LOC110524404 LOC106613872 coding upstream 128745 67080011 ~ 67288985 (+)
LOC110524403 LOC106613871 coding upstream 360054 67003157 ~ 67057676 (+)
trnaa-ugc-14 NA coding upstream 377613 67040047 ~ 67040117 (+)
gpc5b LOC106613866 coding upstream 430408 66891208 ~ 66987322 (+)
rpp21 rp21 coding upstream 533702 66840697 ~ 66884634 (+)
LOC110524406 LOC106613873 coding downstream 7833 67426327 ~ 67449696 (+)
LOC110524407 LOC106613876 coding downstream 40046 67458540 ~ 67464323 (+)
fxr1 fxr1 coding downstream 72659 67491153 ~ 67511405 (+)
LOC110524410 NA coding downstream 98918 67517412 ~ 67649527 (+)
sox2 sox2 coding downstream 203777 67622271 ~ 67624355 (+)
G430169 NA non-coding upstream 51830 67364692 ~ 67365900 (+)
G429865 NA non-coding upstream 166390 67199597 ~ 67251340 (+)
G429771 NA non-coding upstream 343855 67073675 ~ 67073875 (+)
G429767 NA non-coding upstream 345651 67071791 ~ 67072079 (+)
G429103 NA non-coding upstream 529846 66887660 ~ 66887884 (+)
G430268 NA non-coding downstream 4048 67422542 ~ 67422889 (+)
G430271 NA non-coding downstream 5216 67423710 ~ 67423993 (+)
G430279 NA non-coding downstream 9296 67427790 ~ 67428173 (+)
G430282 NA non-coding downstream 10190 67428684 ~ 67428887 (+)
G430285 NA non-coding downstream 17373 67435867 ~ 67436173 (+)
G429156 NA other upstream 369566 66981949 ~ 67048164 (+)
G428696 NA other upstream 1275125 66142079 ~ 66142605 (+)
G427747 NA other upstream 1896350 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 2389028 65024444 ~ 65028828 (+)
G427476 NA other upstream 2420592 64992101 ~ 64997138 (+)
G430796 LOC106613888 other downstream 684685 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 794222 68212224 ~ 68214236 (+)
G434653 NA other downstream 3541116 70959610 ~ 70959932 (+)
G434792 LOC106613943 other downstream 3800295 71218789 ~ 71223578 (+)

Expression


Co-expression Network